Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47000 * 2 1 4 4 C 1.52998 * 109.46983 * 120.00036 * 2 1 3 5 5 C 1.50700 * 109.46827 * 184.99565 * 4 2 1 6 6 H 1.07999 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99833 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00308 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00328 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47405 * 89.98959 * 9 7 5 11 11 H 1.48500 * 109.47303 * 210.00009 * 9 7 5 12 12 H 1.48511 * 109.46651 * 329.99435 * 9 7 5 13 13 N 1.46901 * 109.46996 * 240.00218 * 2 1 3 14 14 N 1.45408 * 110.99804 * 299.99802 * 13 2 1 15 15 C 1.47010 * 111.00072 * 243.63361 * 14 13 2 16 16 C 1.53100 * 109.25807 * 177.60874 * 15 14 13 17 17 O 1.43013 * 109.25570 * 56.85242 * 16 15 14 18 18 C 1.43014 * 113.73579 * 301.32666 * 17 16 15 19 19 C 1.47010 * 110.99698 * 120.00233 * 14 13 2 20 20 H 1.08995 * 109.46960 * 60.00235 * 1 2 3 21 21 H 1.08997 * 109.46669 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47109 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47327 * 305.00142 * 4 2 1 24 24 H 1.08999 * 109.47111 * 65.00176 * 4 2 1 25 25 H 0.96996 * 120.00083 * 180.02562 * 8 7 5 26 26 H 1.00901 * 111.00067 * 63.95055 * 13 2 1 27 27 H 1.08995 * 109.50754 * 297.54730 * 15 14 13 28 28 H 1.09006 * 109.50308 * 57.67400 * 15 14 13 29 29 H 1.09000 * 109.50384 * 296.91271 * 16 15 14 30 30 H 1.08999 * 109.54112 * 176.81079 * 16 15 14 31 31 H 1.08998 * 109.51278 * 298.73681 * 18 17 16 32 32 H 1.09006 * 109.53749 * 178.62747 * 18 17 16 33 33 H 1.09001 * 109.51010 * 302.32439 * 19 14 13 34 34 H 1.08999 * 109.50964 * 62.41198 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2304 -1.1927 2.3582 8 7 5.5411 -1.0996 2.4139 9 14 3.3015 -2.1078 3.6959 10 1 3.1706 -3.5379 3.3180 11 1 4.0448 -2.0002 4.9770 12 1 1.9504 -1.5125 3.8561 13 7 2.0197 -0.6925 -1.1995 14 7 1.5535 -2.0694 -1.2331 15 6 2.6812 -3.0094 -1.1581 16 6 2.1433 -4.4427 -1.1362 17 8 1.3332 -4.6602 -2.2945 18 6 0.2251 -3.7622 -2.3989 19 6 0.7436 -2.3221 -2.4336 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.6054 -0.2618 2.1370 24 1 1.7517 -1.7715 1.2055 25 1 6.0254 -1.5064 3.1493 26 1 1.7502 -0.1989 -2.0373 27 1 3.3251 -2.8756 -2.0273 28 1 3.2523 -2.8210 -0.2489 29 1 1.5430 -4.5924 -0.2388 30 1 2.9768 -5.1450 -1.1378 31 1 -0.4311 -3.8921 -1.5383 32 1 -0.3290 -3.9717 -3.3140 33 1 -0.0999 -1.6321 -2.4556 34 1 1.3562 -2.1765 -3.3233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837467.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = -12.578271 kcal Electronic energy + Delta-G solvation = -15418.278767 eV Core-core repulsion = 12966.275834 eV Total energy + Delta-G solvation = -2452.002933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11684 -36.54673 -33.60458 -32.13163 -30.89243 -28.93992 -27.64042 -24.94652 -23.65836 -22.51533 -20.28623 -19.16343 -16.63782 -16.50640 -15.83230 -15.34903 -14.87882 -14.60305 -14.35301 -13.88050 -13.07274 -12.87003 -12.52798 -12.21264 -12.07353 -11.55265 -11.43684 -11.13113 -11.00464 -10.78558 -10.53810 -10.10886 -9.75426 -9.56553 -9.38011 -9.01761 -8.72453 -8.39619 -7.42702 -5.89777 -3.83101 3.36764 3.44926 3.49095 3.70174 4.06088 4.56034 5.01699 5.11249 5.29029 5.33969 5.44261 5.59599 5.68961 5.73837 5.79832 5.84182 5.89421 5.96350 6.09136 6.33957 6.41131 6.66572 6.76322 6.87432 7.17974 7.26066 7.36248 7.58797 7.78218 7.97659 8.19590 8.74741 9.22230 9.73838 11.24064 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.011120 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.739925 B = 2517.451827 C = 2939.262045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H 0.076 0.924 4 C -0.003 4.003 5 C -0.489 4.489 6 H 0.075 0.925 7 C 0.061 3.939 8 N -0.910 5.910 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.503 5.503 14 N -0.366 5.366 15 C 0.031 3.969 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.070 3.930 19 C -0.008 4.008 20 H 0.034 0.966 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.011 0.989 24 H 0.024 0.976 25 H 0.259 0.741 26 H 0.315 0.685 27 H 0.038 0.962 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 -3.436 -7.983 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.002 4.002 3 H 0.094 0.906 4 C -0.040 4.040 5 C -0.527 4.527 6 H 0.093 0.907 7 C -0.138 4.138 8 N -0.550 5.550 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.223 5.223 14 N -0.181 5.181 15 C -0.097 4.097 16 C -0.015 4.015 17 O -0.310 6.310 18 C -0.008 4.008 19 C -0.138 4.138 20 H 0.053 0.947 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.201 -3.849 -7.297 13.120 hybrid contribution -0.906 0.057 -0.020 0.908 sum -11.108 -3.792 -7.317 13.831 Atomic orbital electron populations 1.22496 0.99380 1.01661 1.00063 1.21603 0.90232 0.96800 0.91540 0.90564 1.19574 0.97286 0.96007 0.91155 1.21093 0.89714 1.33553 1.08358 0.90654 1.25003 0.94612 0.96467 0.97756 1.69920 1.06412 1.46338 1.32346 0.86907 0.80444 0.80648 0.81982 1.20531 1.21827 1.19314 1.64009 1.58490 0.95493 1.04300 1.65319 1.19691 0.98564 1.34568 1.22814 0.92803 0.89849 1.04232 1.22813 0.94556 0.96353 0.87812 1.87923 1.40938 1.56487 1.45655 1.22545 0.88820 0.87682 1.01746 1.23233 0.98593 0.98378 0.93562 0.94728 0.92179 0.93068 0.97039 0.95748 0.93132 0.86830 0.94320 0.86642 0.92476 0.88383 0.92566 0.89019 0.90446 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.21 37.16 0.34 -2.53 16 2 C 0.11 2.11 3.09 -67.71 -0.21 1.90 16 3 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.00 -0.06 3.28 -27.88 -0.09 -0.15 16 5 C -0.49 -13.61 8.61 -34.44 -0.30 -13.91 16 6 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.87 21.86 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 N -0.50 -9.36 6.30 -4.66 -0.03 -9.39 16 14 N -0.37 -6.40 3.03 -113.50 -0.34 -6.75 16 15 C 0.03 0.58 5.88 -3.71 -0.02 0.56 16 16 C 0.06 0.99 7.01 37.21 0.26 1.25 16 17 O -0.39 -6.08 10.83 -35.23 -0.38 -6.46 16 18 C 0.07 0.92 7.01 37.21 0.26 1.18 16 19 C -0.01 -0.11 5.62 -3.71 -0.02 -0.13 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.06 1.00 7.57 -51.93 -0.39 0.61 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 24 H 0.02 0.59 6.47 -51.93 -0.34 0.25 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.32 5.07 8.20 -174.65 -1.43 3.63 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.12 2.58 6.95 -51.93 -0.36 2.22 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 271.60 15.07 4.09 4.09 Total: -1.00 -30.60 271.60 -7.14 -37.74 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.71 Total: 1.03 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 0.13 Total: -10.17 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.40 Total: -43.43 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.38 Total: -6.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.60 -7.14 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837467.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.162 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds