Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50798 * 2 1 4 4 C 1.53103 * 109.50565 * 239.87155 * 2 1 3 5 5 N 1.47008 * 109.25500 * 296.91108 * 4 2 1 6 6 C 1.46900 * 111.00110 * 177.60850 * 5 4 2 7 7 C 1.47017 * 110.75499 * 301.38164 * 5 4 2 8 8 C 1.53100 * 109.25334 * 58.61941 * 7 5 4 9 9 H 1.08994 * 109.50776 * 63.08815 * 8 7 5 10 10 C 1.53002 * 109.54029 * 183.19223 * 8 7 5 11 11 N 1.46501 * 109.47019 * 184.80217 * 10 8 7 12 12 C 1.36940 * 119.99836 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99815 * 180.02562 * 12 11 10 15 15 N 1.31612 * 120.00043 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99815 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47378 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46907 * 120.00172 * 16 14 12 19 19 H 1.48499 * 109.47167 * 240.00057 * 16 14 12 20 20 O 1.43010 * 109.25887 * 303.14767 * 8 7 5 21 21 H 1.09002 * 109.47153 * 299.91242 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.91433 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.91414 * 1 2 3 24 24 H 1.08994 * 109.51058 * 56.84742 * 4 2 1 25 25 H 1.09001 * 109.50371 * 176.97880 * 4 2 1 26 26 H 1.08994 * 109.47945 * 183.63146 * 6 5 4 27 27 H 1.09003 * 109.47130 * 303.63926 * 6 5 4 28 28 H 1.09008 * 109.46922 * 63.63208 * 6 5 4 29 29 H 1.08997 * 109.50722 * 298.68713 * 7 5 4 30 30 H 1.09002 * 109.54227 * 178.57084 * 7 5 4 31 31 H 1.08999 * 109.47381 * 304.80815 * 10 8 7 32 32 H 1.09005 * 109.46872 * 64.80884 * 10 8 7 33 33 H 0.97000 * 119.99982 * 0.02562 * 11 10 8 34 34 H 0.97002 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 1.6110 -2.1294 -1.2037 6 6 2.0335 -2.8480 -2.4132 7 6 2.1186 -2.7916 0.0068 8 6 1.6066 -2.0464 1.2423 9 1 0.5189 -2.1060 1.2785 10 6 2.1952 -2.6818 2.5036 11 7 1.6163 -2.0429 3.6880 12 6 1.9957 -2.4491 4.9395 13 1 2.7220 -3.2403 5.0533 14 6 1.4468 -1.8440 6.0618 15 7 0.5622 -0.8795 5.9230 16 14 1.9639 -2.3987 7.7689 17 1 2.9643 -3.4900 7.6530 18 1 2.5633 -1.2540 8.5009 19 1 0.7756 -2.8926 8.5100 20 8 2.0076 -0.6758 1.1664 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 -1.0277 -0.0015 23 1 -0.3634 0.5152 -0.8892 24 1 1.6331 -0.2469 -2.1390 25 1 3.1299 -0.6778 -1.2758 26 1 1.6474 -3.8668 -2.3842 27 1 1.6445 -2.3369 -3.2940 28 1 3.1223 -2.8732 -2.4591 29 1 3.2085 -2.7780 -0.0008 30 1 1.7676 -3.8232 0.0325 31 1 1.9639 -3.7470 2.5157 32 1 3.2765 -2.5447 2.5088 33 1 0.9643 -1.3320 3.5857 34 1 0.1783 -0.4569 6.7073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697293640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = -27.211648 kcal Electronic energy + Delta-G solvation = -14999.910922 eV Core-core repulsion = 12547.273438 eV Total energy + Delta-G solvation = -2452.637484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.70000 -35.64124 -34.62784 -32.41790 -30.66136 -29.13176 -26.97412 -25.77385 -23.24390 -22.82258 -21.18453 -19.22966 -17.11163 -16.21435 -15.97458 -15.25161 -15.01519 -14.48026 -14.12736 -13.66040 -13.21777 -12.93931 -12.81474 -12.24259 -12.03502 -11.98901 -11.63349 -11.58839 -11.08984 -10.88554 -10.77898 -10.59805 -10.07140 -9.83295 -9.63378 -9.20108 -8.81238 -8.34204 -6.82351 -5.67456 -2.95632 3.48842 3.53733 3.56490 3.85039 4.14118 4.65505 4.93310 5.02018 5.09046 5.20832 5.37284 5.46566 5.50937 5.62341 5.63823 5.65527 5.73667 5.78215 5.87321 6.00537 6.16598 6.24888 6.36327 6.54471 6.68045 6.82969 6.95677 6.96496 7.69485 7.77337 8.50982 9.62495 10.21297 10.57461 11.55575 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054741 B = 0.006870 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.378169 B = 4074.630805 C = 4409.811395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.100 0.900 4 C 0.024 3.976 5 N -0.539 5.539 6 C 0.026 3.974 7 C 0.026 3.974 8 C 0.086 3.914 9 H 0.070 0.930 10 C 0.162 3.838 11 N -0.726 5.726 12 C -0.237 4.237 13 H 0.070 0.930 14 C -0.015 4.015 15 N -0.932 5.932 16 Si 0.907 3.093 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 O -0.360 6.360 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.024 0.976 33 H 0.388 0.612 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -1.225 -16.410 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.028 3.972 3 H 0.118 0.882 4 C -0.104 4.104 5 N -0.264 5.264 6 C -0.123 4.123 7 C -0.102 4.102 8 C 0.027 3.973 9 H 0.088 0.912 10 C 0.034 3.966 11 N -0.371 5.371 12 C -0.369 4.369 13 H 0.088 0.912 14 C -0.211 4.211 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 O -0.278 6.278 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.222 0.778 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.436 -1.241 -16.120 16.232 hybrid contribution 0.812 -0.126 0.581 1.007 sum 2.248 -1.367 -15.539 15.760 Atomic orbital electron populations 1.22272 0.95701 1.03394 1.01811 1.22207 0.94472 0.95909 0.84647 0.88209 1.22815 0.98386 0.89498 0.99699 1.62183 1.59594 1.02174 1.02432 1.22367 0.98122 0.99269 0.92522 1.22792 0.98236 0.98993 0.90209 1.22450 0.99363 0.81576 0.93882 0.91207 1.20635 0.96294 0.94618 0.85046 1.42253 1.50961 1.43719 1.00119 1.19282 1.19290 1.14832 0.83475 0.91181 1.24738 0.99678 0.98880 0.97780 1.69688 1.32434 1.27467 1.28459 0.86115 0.77579 0.77646 0.84851 1.20602 1.21913 1.21918 1.88217 1.74812 1.23224 1.41565 0.91837 0.91111 0.92447 0.90141 0.94257 0.91276 0.91521 0.95758 0.93983 0.89719 0.95008 0.95800 0.77836 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.88 37.16 0.33 -2.13 16 2 C 0.09 1.27 3.92 -26.68 -0.10 1.17 16 3 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.02 0.31 5.08 -3.71 -0.02 0.29 16 5 N -0.54 -7.07 4.35 -242.59 -1.06 -8.13 16 6 C 0.03 0.26 9.60 60.06 0.58 0.84 16 7 C 0.03 0.39 4.95 -3.71 -0.02 0.37 16 8 C 0.09 1.56 2.44 -26.68 -0.06 1.50 16 9 H 0.07 1.33 6.49 -51.93 -0.34 0.99 16 10 C 0.16 3.50 5.93 -4.04 -0.02 3.48 16 11 N -0.73 -19.61 5.55 -59.91 -0.33 -19.94 16 12 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 13 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 14 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 16 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 O -0.36 -6.93 10.23 -35.23 -0.36 -7.29 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.07 1.07 6.13 -51.93 -0.32 0.76 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.39 11.12 7.67 -40.82 -0.31 10.81 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 274.49 15.07 4.14 4.14 Total: -1.00 -32.20 274.49 -7.07 -39.27 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.59 Total: 4.60 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 0.43 Total: -2.13 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.66 Total: -56.58 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.36 Total: -7.29 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.20 -7.07 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697293640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.059 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds