Wall clock time and date at job start Mon Mar 30 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50798 * 2 1 4 4 C 1.53103 * 109.50565 * 239.87155 * 2 1 3 5 5 N 1.47008 * 109.25500 * 296.91108 * 4 2 1 6 6 C 1.46900 * 111.00110 * 177.60850 * 5 4 2 7 7 C 1.47017 * 110.75499 * 301.38164 * 5 4 2 8 8 C 1.53100 * 109.25334 * 58.61941 * 7 5 4 9 9 H 1.08994 * 109.50776 * 63.08815 * 8 7 5 10 10 C 1.53002 * 109.54029 * 183.19223 * 8 7 5 11 11 N 1.46501 * 109.47019 * 184.80217 * 10 8 7 12 12 C 1.36940 * 119.99836 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99815 * 180.02562 * 12 11 10 15 15 N 1.31612 * 120.00043 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99815 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47378 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46907 * 120.00172 * 16 14 12 19 19 H 1.48499 * 109.47167 * 240.00057 * 16 14 12 20 20 O 1.43010 * 109.25887 * 303.14767 * 8 7 5 21 21 H 1.09002 * 109.47153 * 299.91242 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.91433 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.91414 * 1 2 3 24 24 H 1.08994 * 109.51058 * 56.84742 * 4 2 1 25 25 H 1.09001 * 109.50371 * 176.97880 * 4 2 1 26 26 H 1.08994 * 109.47945 * 183.63146 * 6 5 4 27 27 H 1.09003 * 109.47130 * 303.63926 * 6 5 4 28 28 H 1.09008 * 109.46922 * 63.63208 * 6 5 4 29 29 H 1.08997 * 109.50722 * 298.68713 * 7 5 4 30 30 H 1.09002 * 109.54227 * 178.57084 * 7 5 4 31 31 H 1.08999 * 109.47381 * 304.80815 * 10 8 7 32 32 H 1.09005 * 109.46872 * 64.80884 * 10 8 7 33 33 H 0.97000 * 119.99982 * 0.02562 * 11 10 8 34 34 H 0.97002 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 1.6110 -2.1294 -1.2037 6 6 2.0335 -2.8480 -2.4132 7 6 2.1186 -2.7916 0.0068 8 6 1.6066 -2.0464 1.2423 9 1 0.5189 -2.1060 1.2785 10 6 2.1952 -2.6818 2.5036 11 7 1.6163 -2.0429 3.6880 12 6 1.9957 -2.4491 4.9395 13 1 2.7220 -3.2403 5.0533 14 6 1.4468 -1.8440 6.0618 15 7 0.5622 -0.8795 5.9230 16 14 1.9639 -2.3987 7.7689 17 1 2.9643 -3.4900 7.6530 18 1 2.5633 -1.2540 8.5009 19 1 0.7756 -2.8926 8.5100 20 8 2.0076 -0.6758 1.1664 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 -1.0277 -0.0015 23 1 -0.3634 0.5152 -0.8892 24 1 1.6331 -0.2469 -2.1390 25 1 3.1299 -0.6778 -1.2758 26 1 1.6474 -3.8668 -2.3842 27 1 1.6445 -2.3369 -3.2940 28 1 3.1223 -2.8732 -2.4591 29 1 3.2085 -2.7780 -0.0008 30 1 1.7676 -3.8232 0.0325 31 1 1.9639 -3.7470 2.5157 32 1 3.2765 -2.5447 2.5088 33 1 0.9643 -1.3320 3.5857 34 1 0.1783 -0.4569 6.7073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697293640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:56 Heat of formation + Delta-G solvation = -51.355630 kcal Electronic energy + Delta-G solvation = -15000.957884 eV Core-core repulsion = 12547.273438 eV Total energy + Delta-G solvation = -2453.684446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93043 -36.96969 -36.34543 -34.11252 -32.38218 -30.59133 -27.95415 -27.42438 -24.98054 -24.03854 -22.77370 -20.48051 -19.19628 -17.52028 -17.25114 -16.83552 -16.11858 -16.02792 -15.52790 -15.19274 -14.76621 -14.64818 -14.20120 -13.68600 -13.32511 -12.98695 -12.92040 -12.82192 -12.75339 -12.64855 -12.21123 -12.12347 -11.95220 -11.72145 -11.22473 -10.96576 -10.49496 -9.35711 -9.00608 -7.93777 -5.23602 1.47418 1.49596 1.59690 2.55620 2.79753 2.89939 3.39999 3.71363 3.88890 4.01556 4.08727 4.18967 4.32296 4.42473 4.49115 4.57602 4.59997 4.69892 4.72015 4.79079 4.84136 5.01352 5.02213 5.10518 5.18658 5.40701 5.48102 5.91906 6.02448 6.27056 6.38682 7.33400 8.08239 8.33216 9.30467 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054741 B = 0.006870 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.378169 B = 4074.630805 C = 4409.811395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.112 0.888 4 C 0.030 3.970 5 N -0.548 5.548 6 C 0.026 3.974 7 C 0.037 3.963 8 C 0.094 3.906 9 H 0.057 0.943 10 C 0.159 3.841 11 N -0.741 5.741 12 C -0.248 4.248 13 H 0.078 0.922 14 C -0.078 4.078 15 N -0.971 5.971 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.293 1.293 19 H -0.290 1.290 20 O -0.396 6.396 21 H 0.040 0.960 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.374 0.626 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -1.974 -17.769 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.129 0.871 4 C -0.098 4.098 5 N -0.273 5.273 6 C -0.122 4.122 7 C -0.092 4.092 8 C 0.036 3.964 9 H 0.075 0.925 10 C 0.032 3.968 11 N -0.384 5.384 12 C -0.379 4.379 13 H 0.096 0.904 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.220 1.220 19 H -0.217 1.217 20 O -0.315 6.315 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.127 0.873 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.206 0.794 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.040 -2.021 -17.523 17.757 hybrid contribution 0.638 0.130 0.918 1.125 sum 2.679 -1.891 -16.605 16.926 Atomic orbital electron populations 1.22195 0.95377 1.02655 1.02164 1.22519 0.94829 0.96500 0.84396 0.87074 1.22782 0.98332 0.89288 0.99358 1.62186 1.59820 1.02524 1.02739 1.22448 0.98514 0.99642 0.91585 1.22609 0.97936 0.99152 0.89527 1.22216 0.98288 0.81880 0.93995 0.92545 1.20806 0.95750 0.95258 0.84957 1.42466 1.50963 1.43700 1.01238 1.19727 1.18920 1.14637 0.84659 0.90403 1.25649 1.00105 0.99309 1.01944 1.69859 1.33965 1.28997 1.29360 0.84994 0.77371 0.77393 0.79494 1.18846 1.22043 1.21737 1.88149 1.75466 1.23802 1.44111 0.94037 0.92328 0.89465 0.87286 0.94401 0.90456 0.89683 0.95373 0.94163 0.88367 0.93586 0.96322 0.79399 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 8.88 71.98 0.64 -3.94 16 2 C 0.08 2.15 3.92 30.63 0.12 2.27 16 3 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 4 C 0.03 0.69 5.08 86.32 0.44 1.13 16 5 N -0.55 -13.03 4.35 -921.43 -4.01 -17.04 16 6 C 0.03 0.44 9.60 127.69 1.23 1.66 16 7 C 0.04 1.02 4.95 86.31 0.43 1.45 16 8 C 0.09 3.45 2.44 30.63 0.07 3.52 16 9 H 0.06 2.19 6.49 -2.39 -0.02 2.18 16 10 C 0.16 6.91 5.93 86.38 0.51 7.42 16 11 N -0.74 -40.82 5.55 -343.44 -1.91 -42.72 16 12 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 13 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 14 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 15 N -0.97 -62.17 13.06 21.65 0.28 -61.89 16 16 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 O -0.40 -15.37 10.23 -148.98 -1.52 -16.90 16 21 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.75 6.13 -2.39 -0.01 1.73 16 23 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.37 22.24 7.67 -92.71 -0.71 21.53 16 34 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.31 274.49 -0.03 -69.34 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.35 Total: 24.06 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.74 Total: -4.44 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.63 Total: -121.65 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.52 Total: -16.90 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -69.31 -0.03 -69.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697293640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.981 kcal (2) G-P(sol) polarization free energy of solvation -69.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds