Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47610 * 2 1 4 4 C 1.42903 * 114.00023 * 176.33461 * 3 2 1 5 5 C 1.52999 * 109.54310 * 298.53610 * 4 3 2 6 6 C 1.50697 * 109.47209 * 301.35142 * 5 4 3 7 7 H 1.07999 * 120.00364 * 3.20127 * 6 5 4 8 8 C 1.37881 * 120.00067 * 183.19277 * 6 5 4 9 9 N 1.31511 * 120.00067 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99679 * 0.27704 * 8 6 5 11 11 H 1.48499 * 109.47228 * 269.72337 * 10 8 6 12 12 H 1.48495 * 109.47354 * 29.72674 * 10 8 6 13 13 H 1.48506 * 109.46750 * 149.72404 * 10 8 6 14 14 C 1.53176 * 109.61724 * 58.76442 * 4 3 2 15 15 C 1.53086 * 109.16801 * 62.92753 * 14 4 3 16 16 O 1.42905 * 109.41394 * 57.60818 * 15 14 4 17 17 C 1.42907 * 114.09562 * 298.84359 * 16 15 14 18 18 C 1.53084 * 109.41641 * 61.16005 * 17 16 15 19 19 H 1.09002 * 109.46440 * 59.99964 * 1 2 3 20 20 H 1.08999 * 109.47350 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47176 * 300.00682 * 1 2 3 22 22 H 1.09004 * 109.47578 * 239.99370 * 2 1 3 23 23 H 1.09002 * 109.46947 * 120.00176 * 2 1 3 24 24 H 1.08996 * 109.46998 * 181.34955 * 5 4 3 25 25 H 1.09002 * 109.46968 * 61.34866 * 5 4 3 26 26 H 0.97003 * 119.99713 * 180.02562 * 9 8 6 27 27 H 1.09003 * 109.51999 * 182.83462 * 14 4 3 28 28 H 1.09000 * 109.51759 * 303.02050 * 14 4 3 29 29 H 1.09004 * 109.48257 * 297.63127 * 15 14 4 30 30 H 1.08995 * 109.49421 * 177.59654 * 15 14 4 31 31 H 1.08996 * 109.48052 * 301.16853 * 17 16 15 32 32 H 1.09004 * 109.48600 * 181.14953 * 17 16 15 33 33 H 1.08999 * 109.52460 * 182.48241 * 18 17 16 34 34 H 1.09000 * 109.57886 * 62.32468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4285 1.4608 0.0835 5 6 3.9152 0.8421 1.3954 6 6 3.2598 1.5451 2.5560 7 1 2.5268 2.3174 2.3754 8 6 3.5958 1.2022 3.8485 9 7 3.0234 1.8154 4.8614 10 14 4.8691 -0.1283 4.1609 11 1 4.1936 -1.4473 4.2569 12 1 5.8448 -0.1522 3.0417 13 1 5.5813 0.1568 5.4324 14 6 4.0730 0.7297 -1.0982 15 6 3.6423 1.4053 -2.4027 16 8 4.0165 2.7841 -2.3697 17 6 3.4068 3.5290 -1.3135 18 6 3.8281 2.9388 0.0346 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 4.9973 0.9507 1.4688 25 1 3.6540 -0.2160 1.4170 26 1 3.2601 1.5744 5.7707 27 1 5.1582 0.7743 -1.0060 28 1 3.7494 -0.3111 -1.1029 29 1 2.5609 1.3248 -2.5139 30 1 4.1317 0.9159 -3.2446 31 1 2.3224 3.4763 -1.4106 32 1 3.7266 4.5695 -1.3708 33 1 3.3293 3.4778 0.8401 34 1 4.9082 3.0280 0.1509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702672227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -125.933853 kcal Electronic energy + Delta-G solvation = -15592.984725 eV Core-core repulsion = 13103.773573 eV Total energy + Delta-G solvation = -2489.211151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02623 -38.21380 -35.29451 -33.96019 -32.09502 -31.41334 -30.49261 -25.98186 -24.87940 -23.44449 -22.67947 -20.62663 -18.93382 -17.47684 -16.98495 -16.85396 -16.39804 -16.06418 -15.79208 -15.42406 -14.74905 -14.28774 -13.93762 -13.65411 -13.46199 -13.08734 -12.97378 -12.77066 -12.59351 -12.32154 -12.16463 -12.01660 -11.85408 -11.67538 -11.18720 -10.93047 -10.73109 -10.49784 -9.96301 -8.24941 -6.26151 1.31661 1.34189 1.44426 2.35214 2.91512 3.03024 3.10916 3.83270 3.96781 4.08384 4.13812 4.26078 4.37976 4.47256 4.53199 4.57821 4.71495 4.79970 4.81065 4.89075 4.97010 5.03476 5.06535 5.18623 5.21321 5.27230 5.31820 5.50780 5.65775 6.28569 6.34128 6.60244 6.81830 7.35598 8.91741 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.011208 C = 0.009951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.524026 B = 2497.530735 C = 2813.144439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.385 6.385 4 C 0.128 3.872 5 C -0.033 4.033 6 C -0.498 4.498 7 H 0.037 0.963 8 C 0.003 3.997 9 N -0.952 5.952 10 Si 0.940 3.060 11 H -0.270 1.270 12 H -0.248 1.248 13 H -0.286 1.286 14 C -0.179 4.179 15 C 0.068 3.932 16 O -0.397 6.397 17 C 0.071 3.929 18 C -0.130 4.130 19 H 0.067 0.933 20 H 0.089 0.911 21 H 0.039 0.961 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.025 0.975 25 H 0.018 0.982 26 H 0.263 0.737 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -4.074 -13.881 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 O -0.305 6.305 4 C 0.088 3.912 5 C -0.070 4.070 6 C -0.536 4.536 7 H 0.055 0.945 8 C -0.193 4.193 9 N -0.594 5.594 10 Si 0.764 3.236 11 H -0.195 1.195 12 H -0.171 1.171 13 H -0.212 1.212 14 C -0.217 4.217 15 C -0.008 4.008 16 O -0.316 6.316 17 C -0.005 4.005 18 C -0.167 4.167 19 H 0.086 0.914 20 H 0.108 0.892 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.819 -3.823 -13.849 14.390 hybrid contribution 0.297 -0.708 1.352 1.555 sum 1.116 -4.531 -12.498 13.340 Atomic orbital electron populations 1.21695 0.93162 1.02965 1.02051 1.22514 0.95962 0.84461 0.99720 1.87845 1.21258 1.26930 1.94482 1.21341 0.80768 0.95720 0.93336 1.20122 0.96584 0.96100 0.94207 1.21161 1.22360 1.19774 0.90319 0.94515 1.25917 0.98475 0.98823 0.96059 1.70068 1.45553 1.44532 0.99218 0.85816 0.80102 0.79584 0.78101 1.19491 1.17113 1.21233 1.22812 1.01986 1.00901 0.95974 1.22584 0.99853 0.81401 0.96984 1.87827 1.70774 1.21797 1.51166 1.22540 0.97105 0.95746 0.85155 1.22027 1.01390 0.94786 0.98523 0.91370 0.89217 0.94145 0.91885 0.94979 0.95629 0.96341 0.92818 0.90229 0.89680 0.92960 0.86648 0.93161 0.87474 0.92117 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 10.28 71.98 0.74 -3.40 16 2 C 0.05 1.71 5.85 71.98 0.42 2.13 16 3 O -0.39 -15.55 8.45 -148.98 -1.26 -16.81 16 4 C 0.13 5.00 0.36 -10.67 0.00 4.99 16 5 C -0.03 -1.52 2.76 29.85 0.08 -1.44 16 6 C -0.50 -28.45 8.59 25.60 0.22 -28.23 16 7 H 0.04 2.37 7.07 -2.91 -0.02 2.34 16 8 C 0.00 0.19 5.47 84.66 0.46 0.65 16 9 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 10 Si 0.94 44.38 27.54 68.60 1.89 46.27 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.25 -10.82 6.44 99.48 0.64 -10.18 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 14 C -0.18 -5.46 4.61 30.68 0.14 -5.32 16 15 C 0.07 1.83 6.70 72.01 0.48 2.31 16 16 O -0.40 -12.25 10.77 -148.98 -1.60 -13.86 16 17 C 0.07 2.25 6.69 72.01 0.48 2.73 16 18 C -0.13 -4.97 4.85 30.68 0.15 -4.82 16 19 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.77 6.54 -2.38 -0.02 1.76 16 23 H 0.03 1.26 6.31 -2.39 -0.02 1.24 16 24 H 0.03 1.18 6.96 -2.39 -0.02 1.16 16 25 H 0.02 0.84 6.17 -2.39 -0.01 0.82 16 26 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.34 6.47 -2.39 -0.02 2.32 16 29 H 0.05 1.41 7.82 -2.39 -0.02 1.39 16 30 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.64 7.82 -2.39 -0.02 1.62 16 32 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.06 2.70 6.90 -2.39 -0.02 2.68 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -66.88 264.87 3.50 -63.38 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.00 Total: 11.31 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.18 Total: -30.39 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.30 Total: -59.90 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -2.86 Total: -30.67 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.89 Total: 46.27 kcal Total: -66.88 3.50 -63.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702672227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.556 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds