Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.45392 * 2 1 4 4 C 1.54472 * 110.62921 * 122.68504 * 2 1 3 5 5 O 1.44425 * 104.80190 * 142.67845 * 4 2 1 6 6 C 1.44421 * 105.27967 * 319.48952 * 5 4 2 7 7 C 1.54487 * 104.79872 * 40.51065 * 6 5 4 8 8 H 1.09003 * 110.50578 * 94.66973 * 7 6 5 9 9 O 1.42896 * 110.51004 * 217.23806 * 7 6 5 10 10 C 1.42899 * 114.00124 * 268.54913 * 9 7 6 11 11 C 1.52999 * 109.47349 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47675 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47412 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00039 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00385 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47096 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47226 * 120.00079 * 17 15 13 20 20 H 1.48503 * 109.47020 * 240.00357 * 17 15 13 21 21 H 1.08999 * 109.47459 * 182.60012 * 1 2 3 22 22 H 1.08995 * 109.47254 * 302.60616 * 1 2 3 23 23 H 1.09003 * 109.47354 * 62.60342 * 1 2 3 24 24 H 1.08999 * 110.37330 * 261.51226 * 4 2 1 25 25 H 1.09004 * 110.37299 * 23.85089 * 4 2 1 26 26 H 1.08997 * 110.37554 * 281.67915 * 6 5 4 27 27 H 1.09004 * 110.37353 * 159.34062 * 6 5 4 28 28 H 1.09003 * 109.46976 * 299.99804 * 10 9 7 29 29 H 1.08997 * 109.47374 * 59.99897 * 10 9 7 30 30 H 1.08996 * 109.47376 * 300.00147 * 11 10 9 31 31 H 1.09006 * 109.46874 * 60.00020 * 11 10 9 32 32 H 1.09003 * 109.46985 * 300.00170 * 12 11 10 33 33 H 1.09006 * 109.46782 * 60.00174 * 12 11 10 34 34 H 0.96994 * 119.99769 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0742 -0.7807 1.2168 5 8 3.2434 -1.4684 0.7210 6 6 2.8787 -1.9394 -0.5947 7 6 2.0713 -0.7797 -1.2191 8 1 2.7200 -0.1439 -1.8218 9 8 0.9952 -1.2878 -2.0101 10 6 1.3275 -1.4846 -3.3859 11 6 0.1078 -2.0285 -4.1325 12 6 0.4634 -2.2387 -5.6057 13 6 -0.7382 -2.7738 -6.3411 14 1 -1.6629 -2.9470 -5.8108 15 6 -0.6569 -3.0421 -7.6911 16 7 0.4693 -2.8316 -8.3368 17 14 -2.1461 -3.7061 -8.6026 18 1 -3.2805 -3.8540 -7.6559 19 1 -2.5252 -2.7627 -9.6849 20 1 -1.8167 -5.0288 -9.1917 21 1 -0.3634 -1.0266 0.0466 22 1 -0.3633 0.5537 0.8656 23 1 -0.3634 0.4729 -0.9124 24 1 2.3491 -0.0932 2.0167 25 1 1.3333 -1.4981 1.5697 26 1 2.2611 -2.8344 -0.5197 27 1 3.7715 -2.1419 -1.1863 28 1 1.6296 -0.5344 -3.8263 29 1 2.1481 -2.1980 -3.4630 30 1 -0.1939 -2.9787 -3.6920 31 1 -0.7130 -1.3154 -4.0554 32 1 0.7648 -1.2882 -6.0459 33 1 1.2844 -2.9516 -5.6831 34 1 0.5265 -3.0208 -9.2864 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703531307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = -114.926197 kcal Electronic energy + Delta-G solvation = -14349.954849 eV Core-core repulsion = 11861.221025 eV Total energy + Delta-G solvation = -2488.733824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85322 -37.10739 -34.02335 -33.02991 -31.42944 -28.90438 -26.57043 -26.23783 -23.19827 -22.60852 -20.48323 -19.97809 -17.03732 -16.41433 -16.14554 -15.75442 -15.16504 -14.67341 -14.43350 -13.97454 -13.57143 -12.86911 -12.55209 -12.35132 -12.10168 -11.93431 -11.51934 -11.08058 -11.05660 -10.84763 -10.69257 -10.52590 -10.34033 -10.00468 -9.80556 -9.46694 -9.20223 -9.10900 -8.37462 -6.02488 -4.04778 3.30519 3.37889 3.42462 3.66546 4.09192 4.44166 4.48135 4.64414 4.82052 5.11443 5.19868 5.33741 5.42127 5.48666 5.59724 5.63345 5.68860 5.71460 5.82551 5.93245 6.05877 6.15590 6.34488 6.56262 6.65152 6.74474 7.06467 7.51735 7.64241 7.76075 7.97009 8.39759 9.02149 9.59574 11.09120 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.066150 B = 0.004937 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.178196 B = 5670.372302 C = 5887.040222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 H 0.086 0.914 4 C 0.049 3.951 5 O -0.376 6.376 6 C 0.022 3.978 7 C 0.058 3.942 8 H 0.073 0.927 9 O -0.371 6.371 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 4.995 15.854 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 H 0.104 0.896 4 C -0.028 4.028 5 O -0.294 6.294 6 C -0.055 4.055 7 C -0.001 4.001 8 H 0.091 0.909 9 O -0.291 6.291 10 C -0.017 4.017 11 C -0.144 4.144 12 C -0.014 4.014 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.145 4.907 15.860 16.897 hybrid contribution -0.595 -0.283 -0.912 1.126 sum 2.550 4.624 14.948 15.853 Atomic orbital electron populations 1.21486 0.92850 1.02700 1.01620 1.22609 0.98261 0.99543 0.93952 0.89562 1.23530 0.87955 0.95099 0.96229 1.89106 1.35135 1.74120 1.31082 1.24009 0.99968 0.97527 0.83977 1.23382 0.89359 0.94418 0.92985 0.90912 1.87977 1.35190 1.85002 1.20899 1.22884 0.99686 0.99204 0.79906 1.21644 0.95163 1.00003 0.97615 1.19057 0.97183 0.97108 0.88085 1.21253 0.97754 1.43028 0.93705 0.92476 1.25027 0.96014 0.95707 0.97737 1.69974 1.25369 1.48984 1.09247 0.86512 0.82998 0.78607 0.79763 1.19681 1.20994 1.20982 0.91838 0.93167 0.91589 0.89152 0.91888 0.91060 0.88873 0.93682 0.93787 0.92589 0.92590 0.96491 0.96479 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.21 37.16 0.30 -1.14 16 2 C -0.12 -1.39 3.71 -89.06 -0.33 -1.72 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.05 0.52 7.19 37.93 0.27 0.79 16 5 O -0.38 -4.94 11.65 -35.23 -0.41 -5.35 16 6 C 0.02 0.29 7.38 37.94 0.28 0.57 16 7 C 0.06 0.76 3.55 -25.16 -0.09 0.67 16 8 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 9 O -0.37 -5.96 8.33 -35.23 -0.29 -6.25 16 10 C 0.06 1.04 5.80 37.16 0.22 1.25 16 11 C -0.11 -2.25 5.52 -26.73 -0.15 -2.40 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.64 7.84 -51.93 -0.41 0.24 16 26 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 282.01 15.07 4.25 4.25 Total: -1.00 -30.33 282.01 -6.60 -36.93 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -5.82 Total: -4.91 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.04 Total: -15.12 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.70 Total: -11.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.33 -6.60 -36.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703531307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.993 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds