Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.45392 * 2 1 4 4 C 1.54472 * 110.62921 * 122.68504 * 2 1 3 5 5 O 1.44425 * 104.80190 * 142.67845 * 4 2 1 6 6 C 1.44421 * 105.27967 * 319.48952 * 5 4 2 7 7 C 1.54487 * 104.79872 * 40.51065 * 6 5 4 8 8 H 1.09003 * 110.50578 * 94.66973 * 7 6 5 9 9 O 1.42896 * 110.51004 * 217.23806 * 7 6 5 10 10 C 1.42899 * 114.00124 * 268.54913 * 9 7 6 11 11 C 1.52999 * 109.47349 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47675 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47412 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00039 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00385 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47096 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47226 * 120.00079 * 17 15 13 20 20 H 1.48503 * 109.47020 * 240.00357 * 17 15 13 21 21 H 1.08999 * 109.47459 * 182.60012 * 1 2 3 22 22 H 1.08995 * 109.47254 * 302.60616 * 1 2 3 23 23 H 1.09003 * 109.47354 * 62.60342 * 1 2 3 24 24 H 1.08999 * 110.37330 * 261.51226 * 4 2 1 25 25 H 1.09004 * 110.37299 * 23.85089 * 4 2 1 26 26 H 1.08997 * 110.37554 * 281.67915 * 6 5 4 27 27 H 1.09004 * 110.37353 * 159.34062 * 6 5 4 28 28 H 1.09003 * 109.46976 * 299.99804 * 10 9 7 29 29 H 1.08997 * 109.47374 * 59.99897 * 10 9 7 30 30 H 1.08996 * 109.47376 * 300.00147 * 11 10 9 31 31 H 1.09006 * 109.46874 * 60.00020 * 11 10 9 32 32 H 1.09003 * 109.46985 * 300.00170 * 12 11 10 33 33 H 1.09006 * 109.46782 * 60.00174 * 12 11 10 34 34 H 0.96994 * 119.99769 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0742 -0.7807 1.2168 5 8 3.2434 -1.4684 0.7210 6 6 2.8787 -1.9394 -0.5947 7 6 2.0713 -0.7797 -1.2191 8 1 2.7200 -0.1439 -1.8218 9 8 0.9952 -1.2878 -2.0101 10 6 1.3275 -1.4846 -3.3859 11 6 0.1078 -2.0285 -4.1325 12 6 0.4634 -2.2387 -5.6057 13 6 -0.7382 -2.7738 -6.3411 14 1 -1.6629 -2.9470 -5.8108 15 6 -0.6569 -3.0421 -7.6911 16 7 0.4693 -2.8316 -8.3368 17 14 -2.1461 -3.7061 -8.6026 18 1 -3.2805 -3.8540 -7.6559 19 1 -2.5252 -2.7627 -9.6849 20 1 -1.8167 -5.0288 -9.1917 21 1 -0.3634 -1.0266 0.0466 22 1 -0.3633 0.5537 0.8656 23 1 -0.3634 0.4729 -0.9124 24 1 2.3491 -0.0932 2.0167 25 1 1.3333 -1.4981 1.5697 26 1 2.2611 -2.8344 -0.5197 27 1 3.7715 -2.1419 -1.1863 28 1 1.6296 -0.5344 -3.8263 29 1 2.1481 -2.1980 -3.4630 30 1 -0.1939 -2.9787 -3.6920 31 1 -0.7130 -1.3154 -4.0554 32 1 0.7648 -1.2882 -6.0459 33 1 1.2844 -2.9516 -5.6831 34 1 0.5265 -3.0208 -9.2864 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703531307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = -133.920747 kcal Electronic energy + Delta-G solvation = -14350.778514 eV Core-core repulsion = 11861.221025 eV Total energy + Delta-G solvation = -2489.557489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86170 -38.35423 -35.89039 -34.24385 -33.22697 -30.02269 -28.41566 -27.11520 -24.97022 -23.69466 -22.12257 -21.13971 -18.64611 -17.82451 -17.41105 -16.97364 -16.49270 -16.21833 -15.85770 -15.23910 -14.66946 -14.42378 -14.12346 -13.69142 -13.34546 -13.25359 -13.10393 -12.78599 -12.47809 -12.22763 -12.05126 -11.88217 -11.62336 -11.54323 -11.43567 -11.18011 -10.91020 -10.57420 -10.44210 -8.22108 -6.33035 1.40548 1.40730 1.54398 2.38616 2.55658 3.10548 3.11651 3.51174 3.74413 3.86384 4.13632 4.18999 4.23939 4.31588 4.53717 4.58258 4.65015 4.70165 4.75878 4.81365 4.91424 4.94443 5.04682 5.16521 5.18141 5.43820 5.48727 5.69059 5.69575 5.82005 6.17906 6.30966 6.83101 7.36464 8.90176 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.066150 B = 0.004937 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.178196 B = 5670.372302 C = 5887.040222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 H 0.104 0.896 4 C 0.047 3.953 5 O -0.389 6.389 6 C 0.023 3.977 7 C 0.047 3.953 8 H 0.080 0.920 9 O -0.379 6.379 10 C 0.071 3.929 11 C -0.095 4.095 12 C 0.027 3.973 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.054 0.946 32 H -0.003 1.003 33 H -0.003 1.003 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 5.324 16.794 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 H 0.122 0.878 4 C -0.030 4.030 5 O -0.309 6.309 6 C -0.054 4.054 7 C -0.011 4.011 8 H 0.098 0.902 9 O -0.299 6.299 10 C -0.006 4.006 11 C -0.132 4.132 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.134 0.866 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.550 5.241 16.823 17.804 hybrid contribution -0.380 -0.361 -1.150 1.263 sum 2.170 4.881 15.673 16.558 Atomic orbital electron populations 1.21449 0.92934 1.01988 1.01972 1.22668 0.98154 1.00224 0.93022 0.87811 1.23708 0.87358 0.95403 0.96494 1.89095 1.36292 1.74431 1.31035 1.23975 1.00139 0.97050 0.84231 1.23642 0.88998 0.94968 0.93484 0.90189 1.87943 1.36541 1.85417 1.19954 1.22559 0.97808 0.99363 0.80825 1.21371 0.96680 1.00122 0.95065 1.18937 0.95846 0.95251 0.91032 1.21683 0.98598 1.43405 0.94541 0.92264 1.25966 0.99202 0.95802 0.98715 1.70091 1.27589 1.49833 1.09778 0.85379 0.79163 0.78023 0.78372 1.18698 1.20238 1.20262 0.93271 0.90738 0.93091 0.86621 0.91646 0.91859 0.88100 0.93190 0.93299 0.92794 0.92717 0.98483 0.98497 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.21 71.98 0.59 -2.01 16 2 C -0.12 -2.46 3.71 -9.78 -0.04 -2.49 16 3 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.05 0.88 7.19 72.48 0.52 1.40 16 5 O -0.39 -9.55 11.65 -148.98 -1.74 -11.29 16 6 C 0.02 0.57 7.38 72.49 0.53 1.10 16 7 C 0.05 1.19 3.55 31.61 0.11 1.30 16 8 H 0.08 1.89 7.86 -2.39 -0.02 1.87 16 9 O -0.38 -11.84 8.33 -148.98 -1.24 -13.08 16 10 C 0.07 2.46 5.80 71.98 0.42 2.87 16 11 C -0.09 -4.01 5.52 30.59 0.17 -3.85 16 12 C 0.03 1.40 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 17 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 H 0.05 1.14 7.86 -2.39 -0.02 1.13 16 22 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.20 7.92 -2.39 -0.02 1.18 16 24 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 1.20 7.84 -2.39 -0.02 1.18 16 26 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 27 H 0.10 2.25 8.14 -2.38 -0.02 2.24 16 28 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.11 282.01 3.53 -60.58 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.04 Total: 4.47 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.15 Total: -30.67 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -2.98 Total: -24.38 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.11 3.53 -60.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703531307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.338 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds