Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.45441 * 2 1 4 4 C 1.54475 * 110.62943 * 237.31442 * 2 1 3 5 5 O 1.44430 * 104.80448 * 217.31979 * 4 2 1 6 6 C 1.44425 * 105.27441 * 40.51135 * 5 4 2 7 7 C 1.54484 * 104.80303 * 319.48847 * 6 5 4 8 8 H 1.08997 * 110.62704 * 265.27258 * 7 6 5 9 9 O 1.42905 * 110.50895 * 142.62274 * 7 6 5 10 10 C 1.42899 * 113.99778 * 95.36037 * 9 7 6 11 11 C 1.52999 * 109.46889 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47128 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47403 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00281 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00144 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 359.97438 * 15 13 12 18 18 H 1.48491 * 109.47174 * 89.99914 * 17 15 13 19 19 H 1.48500 * 109.47028 * 210.00294 * 17 15 13 20 20 H 1.48508 * 109.47177 * 329.99897 * 17 15 13 21 21 H 1.09002 * 109.47120 * 297.39420 * 1 2 3 22 22 H 1.09001 * 109.46965 * 57.39722 * 1 2 3 23 23 H 1.09001 * 109.47072 * 177.39788 * 1 2 3 24 24 H 1.08996 * 110.37159 * 336.15012 * 4 2 1 25 25 H 1.09001 * 110.37166 * 98.48971 * 4 2 1 26 26 H 1.08997 * 110.37443 * 200.65848 * 6 5 4 27 27 H 1.08999 * 110.37286 * 78.31625 * 6 5 4 28 28 H 1.08997 * 109.47171 * 299.99768 * 10 9 7 29 29 H 1.08997 * 109.47442 * 59.99964 * 10 9 7 30 30 H 1.08997 * 109.47286 * 300.00017 * 11 10 9 31 31 H 1.09008 * 109.47201 * 60.00236 * 11 10 9 32 32 H 1.09005 * 109.47059 * 299.99976 * 12 11 10 33 33 H 1.08999 * 109.46874 * 59.99868 * 12 11 10 34 34 H 0.96993 * 120.00083 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0743 -0.7807 -1.2168 5 8 3.2435 -1.4685 -0.7210 6 6 2.8787 -1.9394 0.5947 7 6 2.0714 -0.7797 1.2191 8 1 2.7180 -0.1433 1.8232 9 8 0.9932 -1.2879 2.0075 10 6 1.2953 -1.4037 3.3994 11 6 0.0759 -1.9539 4.1418 12 6 0.3994 -2.0785 5.6320 13 6 -0.8014 -2.6210 6.3632 14 1 -1.7050 -2.8540 5.8194 15 6 -0.7467 -2.8199 7.7264 16 7 -1.7949 -3.2928 8.3646 17 14 0.8163 -2.4176 8.6670 18 1 0.7688 -1.0059 9.1251 19 1 0.9311 -3.3163 9.8436 20 1 1.9915 -2.6108 7.7799 21 1 -0.3633 0.4728 0.9124 22 1 -0.3633 0.5537 -0.8657 23 1 -0.3633 -1.0266 -0.0467 24 1 1.3333 -1.4980 -1.5696 25 1 2.3491 -0.0932 -2.0167 26 1 3.7714 -2.1419 1.1863 27 1 2.2611 -2.8343 0.5196 28 1 2.1386 -2.0812 3.5330 29 1 1.5510 -0.4223 3.7987 30 1 -0.7672 -1.2760 4.0082 31 1 -0.1802 -2.9354 3.7427 32 1 1.2424 -2.7567 5.7653 33 1 0.6558 -1.0973 6.0314 34 1 -1.7563 -3.4331 9.3236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703531310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -110.912903 kcal Electronic energy + Delta-G solvation = -14394.201537 eV Core-core repulsion = 11905.641742 eV Total energy + Delta-G solvation = -2488.559794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90986 -37.20478 -34.11138 -33.04314 -31.63286 -29.04400 -27.00374 -26.27521 -23.07456 -22.59544 -20.50676 -19.95172 -17.16641 -16.57603 -16.40809 -15.83119 -15.24721 -14.82739 -14.17139 -14.02419 -13.61406 -13.00790 -12.66553 -12.48848 -12.37763 -12.07344 -11.65861 -11.20156 -11.14040 -10.87114 -10.83032 -10.52568 -10.08808 -9.99139 -9.84547 -9.69845 -9.29368 -9.21806 -8.55923 -6.05960 -4.04447 3.28817 3.36330 3.39160 3.59724 4.02640 4.40125 4.43095 4.59750 4.76442 5.05853 5.13717 5.27498 5.38118 5.44884 5.50748 5.55249 5.61338 5.64945 5.72886 5.87533 5.99147 6.02570 6.31468 6.42389 6.48616 6.61913 6.84060 7.23538 7.37568 7.43474 7.76862 8.52303 8.99184 9.55899 11.07528 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.058845 B = 0.005338 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.714681 B = 5244.112839 C = 5491.028585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.126 4.126 3 H 0.086 0.914 4 C 0.049 3.951 5 O -0.376 6.376 6 C 0.024 3.976 7 C 0.057 3.943 8 H 0.073 0.927 9 O -0.369 6.369 10 C 0.057 3.943 11 C -0.099 4.099 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 6.377 -16.112 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.028 4.028 5 O -0.294 6.294 6 C -0.053 4.053 7 C -0.002 4.002 8 H 0.091 0.909 9 O -0.288 6.288 10 C -0.019 4.019 11 C -0.137 4.137 12 C -0.049 4.049 13 C -0.558 4.558 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.624 6.237 -16.113 19.311 hybrid contribution 0.840 0.274 0.935 1.287 sum 9.464 6.512 -15.178 19.035 Atomic orbital electron populations 1.21493 0.92767 1.02761 1.01664 1.22634 0.98327 0.99544 0.93999 0.89578 1.23535 0.87932 0.95120 0.96233 1.89110 1.35166 1.74133 1.31026 1.23973 0.99865 0.97489 0.84009 1.23408 0.89276 0.94466 0.93050 0.90853 1.87990 1.36458 1.85067 1.19316 1.22900 0.99714 0.99419 0.79870 1.21450 0.95313 1.00788 0.96150 1.19521 0.97862 0.96406 0.91069 1.21102 0.99091 1.42889 0.92765 0.90896 1.25028 0.96154 0.94613 0.97682 1.69912 1.29479 1.45741 1.09060 0.86772 0.84427 0.78461 0.79574 1.20268 1.21316 1.19078 0.91591 0.93114 0.91784 0.91822 0.89120 0.88922 0.90984 0.93795 0.93709 0.91971 0.91950 0.96542 0.96991 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.20 37.16 0.30 -1.11 16 2 C -0.13 -1.35 3.71 -89.05 -0.33 -1.68 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 4 C 0.05 0.50 7.19 37.93 0.27 0.77 16 5 O -0.38 -4.76 11.65 -35.23 -0.41 -5.17 16 6 C 0.02 0.29 7.38 37.94 0.28 0.57 16 7 C 0.06 0.71 3.59 -25.16 -0.09 0.62 16 8 H 0.07 0.86 7.82 -51.93 -0.41 0.46 16 9 O -0.37 -5.65 8.31 -35.23 -0.29 -5.94 16 10 C 0.06 0.93 5.78 37.16 0.21 1.15 16 11 C -0.10 -2.00 5.52 -26.73 -0.15 -2.15 16 12 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 13 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 14 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 17 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.76 7.86 -51.93 -0.41 0.36 16 24 H 0.06 0.63 7.83 -51.93 -0.41 0.22 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 278.36 15.07 4.19 4.19 Total: -1.00 -30.82 278.36 -6.23 -37.05 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -5.78 Total: -4.28 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.04 Total: -15.64 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.70 Total: -11.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.82 -6.23 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703531310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.867 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds