Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.45441 * 2 1 4 4 C 1.54475 * 110.62943 * 237.31442 * 2 1 3 5 5 O 1.44430 * 104.80448 * 217.31979 * 4 2 1 6 6 C 1.44425 * 105.27441 * 40.51135 * 5 4 2 7 7 C 1.54484 * 104.80303 * 319.48847 * 6 5 4 8 8 H 1.08997 * 110.62704 * 265.27258 * 7 6 5 9 9 O 1.42905 * 110.50895 * 142.62274 * 7 6 5 10 10 C 1.42899 * 113.99778 * 95.36037 * 9 7 6 11 11 C 1.52999 * 109.46889 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47128 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47403 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00281 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00144 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 359.97438 * 15 13 12 18 18 H 1.48491 * 109.47174 * 89.99914 * 17 15 13 19 19 H 1.48500 * 109.47028 * 210.00294 * 17 15 13 20 20 H 1.48508 * 109.47177 * 329.99897 * 17 15 13 21 21 H 1.09002 * 109.47120 * 297.39420 * 1 2 3 22 22 H 1.09001 * 109.46965 * 57.39722 * 1 2 3 23 23 H 1.09001 * 109.47072 * 177.39788 * 1 2 3 24 24 H 1.08996 * 110.37159 * 336.15012 * 4 2 1 25 25 H 1.09001 * 110.37166 * 98.48971 * 4 2 1 26 26 H 1.08997 * 110.37443 * 200.65848 * 6 5 4 27 27 H 1.08999 * 110.37286 * 78.31625 * 6 5 4 28 28 H 1.08997 * 109.47171 * 299.99768 * 10 9 7 29 29 H 1.08997 * 109.47442 * 59.99964 * 10 9 7 30 30 H 1.08997 * 109.47286 * 300.00017 * 11 10 9 31 31 H 1.09008 * 109.47201 * 60.00236 * 11 10 9 32 32 H 1.09005 * 109.47059 * 299.99976 * 12 11 10 33 33 H 1.08999 * 109.46874 * 59.99868 * 12 11 10 34 34 H 0.96993 * 120.00083 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0743 -0.7807 -1.2168 5 8 3.2435 -1.4685 -0.7210 6 6 2.8787 -1.9394 0.5947 7 6 2.0714 -0.7797 1.2191 8 1 2.7180 -0.1433 1.8232 9 8 0.9932 -1.2879 2.0075 10 6 1.2953 -1.4037 3.3994 11 6 0.0759 -1.9539 4.1418 12 6 0.3994 -2.0785 5.6320 13 6 -0.8014 -2.6210 6.3632 14 1 -1.7050 -2.8540 5.8194 15 6 -0.7467 -2.8199 7.7264 16 7 -1.7949 -3.2928 8.3646 17 14 0.8163 -2.4176 8.6670 18 1 0.7688 -1.0059 9.1251 19 1 0.9311 -3.3163 9.8436 20 1 1.9915 -2.6108 7.7799 21 1 -0.3633 0.4728 0.9124 22 1 -0.3633 0.5537 -0.8657 23 1 -0.3633 -1.0266 -0.0467 24 1 1.3333 -1.4980 -1.5696 25 1 2.3491 -0.0932 -2.0167 26 1 3.7714 -2.1419 1.1863 27 1 2.2611 -2.8343 0.5196 28 1 2.1386 -2.0812 3.5330 29 1 1.5510 -0.4223 3.7987 30 1 -0.7672 -1.2760 4.0082 31 1 -0.1802 -2.9354 3.7427 32 1 1.2424 -2.7567 5.7653 33 1 0.6558 -1.0973 6.0314 34 1 -1.7563 -3.4331 9.3236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703531310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -131.264035 kcal Electronic energy + Delta-G solvation = -14395.084028 eV Core-core repulsion = 11905.641742 eV Total energy + Delta-G solvation = -2489.442285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85167 -38.36241 -35.88084 -34.26013 -33.42803 -30.13026 -28.71467 -27.11837 -24.64840 -23.68729 -22.03168 -21.12240 -19.00302 -17.89482 -17.39860 -16.96916 -16.33569 -16.24247 -15.81816 -15.22528 -14.84207 -14.57587 -14.25356 -13.78238 -13.41364 -13.25384 -13.15215 -12.73022 -12.43555 -12.11083 -11.92979 -11.80063 -11.65578 -11.55923 -11.48190 -11.30708 -10.90012 -10.77219 -10.42294 -8.29973 -6.35351 1.36863 1.39182 1.51013 2.36451 2.54394 3.05262 3.10873 3.51157 3.75144 3.87410 4.13030 4.18464 4.23085 4.32692 4.54191 4.55302 4.62923 4.70349 4.76135 4.81529 4.82779 4.86486 5.01690 5.06347 5.17077 5.43079 5.45346 5.54850 5.63447 5.70111 6.24457 6.32219 6.73044 7.29333 8.87163 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.058845 B = 0.005338 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.714681 B = 5244.112839 C = 5491.028585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 H 0.104 0.896 4 C 0.046 3.954 5 O -0.390 6.390 6 C 0.024 3.976 7 C 0.049 3.951 8 H 0.086 0.914 9 O -0.383 6.383 10 C 0.068 3.932 11 C -0.094 4.094 12 C -0.008 4.008 13 C -0.537 4.537 14 H 0.028 0.972 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.243 1.243 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.128 7.699 -16.742 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 H 0.122 0.878 4 C -0.030 4.030 5 O -0.309 6.309 6 C -0.053 4.053 7 C -0.010 4.010 8 H 0.104 0.896 9 O -0.302 6.302 10 C -0.008 4.008 11 C -0.131 4.131 12 C -0.045 4.045 13 C -0.575 4.575 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.594 5.594 17 Si 0.778 3.222 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.166 1.166 21 H 0.069 0.931 22 H 0.091 0.909 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.086 7.566 -16.775 21.484 hybrid contribution -0.041 -0.161 1.043 1.056 sum 11.045 7.405 -15.732 20.599 Atomic orbital electron populations 1.21449 0.93157 1.01865 1.01909 1.22689 0.97947 1.00324 0.93307 0.87764 1.23694 0.87359 0.95377 0.96572 1.89099 1.36200 1.74426 1.31163 1.23969 1.00191 0.96977 0.84187 1.23649 0.88889 0.94957 0.93464 0.89578 1.87963 1.37927 1.85552 1.18785 1.22627 0.97642 1.00170 0.80407 1.21251 0.96973 1.00208 0.94714 1.19444 0.95704 0.96633 0.92729 1.21477 0.99559 1.43113 0.93371 0.95351 1.26081 1.00242 0.94275 0.98834 1.70077 1.32316 1.47329 1.09653 0.85588 0.79915 0.78676 0.78047 1.18945 1.20999 1.16579 0.93074 0.90928 0.93438 0.91856 0.86733 0.87730 0.92018 0.92488 0.92283 0.93139 0.93261 0.95619 0.95696 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.20 71.98 0.59 -1.98 16 2 C -0.12 -2.36 3.71 -9.78 -0.04 -2.39 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.05 0.83 7.19 72.48 0.52 1.36 16 5 O -0.39 -9.05 11.65 -148.98 -1.74 -10.79 16 6 C 0.02 0.54 7.38 72.49 0.53 1.07 16 7 C 0.05 1.11 3.59 31.61 0.11 1.22 16 8 H 0.09 1.75 7.82 -2.39 -0.02 1.74 16 9 O -0.38 -11.16 8.31 -148.98 -1.24 -12.39 16 10 C 0.07 2.08 5.78 71.98 0.42 2.49 16 11 C -0.09 -3.74 5.52 30.59 0.17 -3.57 16 12 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 13 C -0.54 -31.49 9.66 25.60 0.25 -31.24 16 14 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 15 C 0.00 0.13 5.47 84.65 0.46 0.59 16 16 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 17 Si 0.96 43.82 27.47 68.60 1.88 45.70 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 21 H 0.05 1.18 7.92 -2.39 -0.02 1.16 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.10 7.86 -2.39 -0.02 1.09 16 24 H 0.06 1.14 7.83 -2.39 -0.02 1.12 16 25 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.49 8.08 -2.39 -0.02 1.48 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.03 1.15 7.20 -2.38 -0.02 1.13 16 33 H 0.02 1.09 7.57 -2.39 -0.02 1.08 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -67.02 278.36 3.33 -63.68 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.99 Total: 6.64 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.14 Total: -32.68 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -2.97 Total: -23.18 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -67.02 3.33 -63.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703531310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.581 kcal (2) G-P(sol) polarization free energy of solvation -67.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds