Wall clock time and date at job start Mon Mar 30 2020 03:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48531 * 110.99865 * 2 1 4 4 C 1.55099 * 103.28591 * 200.33662 * 3 2 1 5 5 C 1.54594 * 102.84757 * 37.30458 * 4 3 2 6 6 O 1.42907 * 110.30733 * 97.11384 * 5 4 3 7 7 C 1.52997 * 110.31340 * 219.18792 * 5 4 3 8 8 N 1.46899 * 109.47254 * 178.61038 * 7 5 4 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00575 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99722 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99924 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47405 * 59.99892 * 14 12 10 16 16 H 1.48506 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47090 * 299.99898 * 14 12 10 18 18 C 1.47900 * 110.99756 * 242.60726 * 2 1 3 19 19 H 1.09001 * 109.47103 * 177.39614 * 1 2 3 20 20 H 1.09001 * 109.47076 * 297.38885 * 1 2 3 21 21 H 1.08998 * 109.47448 * 57.39628 * 1 2 3 22 22 H 1.08999 * 110.67032 * 318.71581 * 3 2 1 23 23 H 1.09002 * 110.66367 * 81.67968 * 3 2 1 24 24 H 1.09004 * 110.70815 * 278.99738 * 4 3 2 25 25 H 1.09000 * 110.81524 * 155.66570 * 4 3 2 26 26 H 0.96699 * 113.99726 * 181.39025 * 6 5 4 27 27 H 1.09002 * 109.47153 * 58.61035 * 7 5 4 28 28 H 1.09001 * 109.46832 * 298.61225 * 7 5 4 29 29 H 1.00902 * 111.00582 * 303.95797 * 8 7 5 30 30 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 31 31 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 32 32 H 0.96998 * 120.00185 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.92081 * 26.48964 * 18 2 1 34 34 H 1.08999 * 109.91687 * 265.19338 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2122 -0.5246 5 6 3.2982 0.1054 -1.5931 6 8 3.1879 0.6846 -2.8949 7 6 4.4895 -0.8530 -1.5385 8 7 4.3100 -1.9148 -2.5376 9 6 5.4379 -2.8558 -2.5142 10 6 5.2191 -3.9278 -3.5504 11 1 4.3313 -3.9117 -4.1652 12 6 6.1525 -4.9295 -3.7137 13 7 7.2339 -4.9490 -2.9655 14 14 5.8817 -6.2581 -4.9986 15 1 5.7858 -5.6345 -6.3429 16 1 7.0218 -7.2093 -4.9750 17 1 4.6225 -6.9863 -4.6999 18 6 1.9989 -0.6353 -1.2260 19 1 -0.3633 -1.0266 -0.0467 20 1 -0.3633 0.4728 0.9125 21 1 -0.3634 0.5537 -0.8657 22 1 1.4237 2.0205 -0.6729 23 1 2.0013 1.7987 1.0092 24 1 4.1137 0.8863 0.2766 25 1 3.8130 2.1361 -0.9751 26 1 3.0688 0.0382 -3.6042 27 1 4.5539 -1.2963 -0.5447 28 1 5.4071 -0.3046 -1.7518 29 1 3.4341 -2.3964 -2.4002 30 1 6.3618 -2.3211 -2.7346 31 1 5.5092 -3.3129 -1.5273 32 1 7.8903 -5.6538 -3.0801 33 1 1.2757 -0.5402 -2.0359 34 1 2.2122 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705668763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:14 Heat of formation + Delta-G solvation = -46.957426 kcal Electronic energy + Delta-G solvation = -14707.213307 eV Core-core repulsion = 12253.719582 eV Total energy + Delta-G solvation = -2453.493725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56529 -36.03797 -34.57915 -32.43069 -31.29610 -28.85132 -26.99338 -25.58540 -23.40114 -21.77313 -20.88110 -19.91262 -17.17405 -16.31643 -15.67907 -15.00686 -14.69785 -14.55035 -14.25874 -13.69597 -13.37441 -13.14680 -12.63095 -12.37995 -12.03425 -11.53234 -11.39097 -11.33686 -11.32513 -11.11500 -10.93103 -10.68498 -10.44040 -9.98435 -9.61523 -9.16437 -8.50260 -8.47966 -7.40712 -6.05087 -4.07743 3.32356 3.36448 3.39178 3.96084 4.40254 4.47872 4.61809 4.79497 4.96128 5.24013 5.30792 5.32536 5.35569 5.46230 5.60475 5.64170 5.75435 5.88669 5.96856 6.05396 6.12976 6.19538 6.39583 6.79736 6.94378 7.19922 7.37954 7.72695 8.00935 8.10084 8.29968 8.53968 9.00469 9.57217 11.05966 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050227 B = 0.006083 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.332863 B = 4601.642542 C = 4777.608341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.035 3.965 4 C -0.112 4.112 5 C 0.128 3.872 6 O -0.558 6.558 7 C 0.039 3.961 8 N -0.692 5.692 9 C 0.196 3.804 10 C -0.517 4.517 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.010 3.990 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.027 0.973 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.387 0.613 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.326 0.674 30 H 0.029 0.971 31 H -0.012 1.012 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 10.288 5.174 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.093 4.093 4 C -0.150 4.150 5 C 0.087 3.913 6 O -0.365 6.365 7 C -0.091 4.091 8 N -0.323 5.323 9 C 0.069 3.931 10 C -0.555 4.555 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.118 4.118 19 H 0.087 0.913 20 H 0.086 0.914 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.237 0.763 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.143 0.857 30 H 0.047 0.953 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.959 10.808 5.485 15.687 hybrid contribution -0.581 -1.445 -0.851 1.774 sum -10.540 9.363 4.635 14.840 Atomic orbital electron populations 1.22512 0.88061 1.02039 1.00659 1.64766 1.07998 1.14929 1.36787 1.23271 0.95210 0.90008 1.00776 1.22527 0.96639 0.98839 0.96972 1.21992 0.93079 0.92313 0.83962 1.86373 1.95788 1.38301 1.16075 1.22526 0.97583 0.94162 0.94856 1.60676 1.07015 1.15928 1.48688 1.19540 0.88590 0.89388 0.95571 1.21129 1.06569 1.08614 1.19233 0.92032 1.24993 0.95083 0.98094 0.96355 1.69952 1.10148 1.33897 1.39646 0.86529 0.77548 0.81226 0.81894 1.20140 1.21308 1.20273 1.23686 0.96585 1.00159 0.91402 0.91306 0.91418 0.95431 0.93577 0.90060 0.89539 0.89883 0.76322 0.95005 0.90852 0.85719 0.95324 0.99442 0.92799 0.92798 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.74 16 2 N -0.52 -6.83 5.55 -238.61 -1.33 -8.16 16 3 C 0.04 0.42 6.56 -1.81 -0.01 0.41 16 4 C -0.11 -1.46 6.37 -24.78 -0.16 -1.62 16 5 C 0.13 1.95 1.15 -89.26 -0.10 1.85 16 6 O -0.56 -8.93 12.94 -35.23 -0.46 -9.39 16 7 C 0.04 0.71 4.65 -3.83 -0.02 0.69 16 8 N -0.69 -14.42 5.92 -115.06 -0.68 -15.10 16 9 C 0.20 5.12 5.44 -4.98 -0.03 5.09 16 10 C -0.52 -14.57 9.32 -34.44 -0.32 -14.89 16 11 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.01 0.14 5.71 -2.75 -0.02 0.13 16 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.03 0.29 8.00 -51.93 -0.42 -0.13 16 22 H 0.05 0.54 7.96 -51.93 -0.41 0.13 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.09 7.86 -51.93 -0.41 0.68 16 25 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 26 H 0.39 5.83 8.54 45.56 0.39 6.22 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.33 6.45 7.10 -39.29 -0.28 6.17 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.05 0.74 7.55 -51.93 -0.39 0.35 16 34 H 0.09 1.31 6.61 -51.93 -0.34 0.96 16 LS Contribution 277.43 15.07 4.18 4.18 Total: -1.00 -30.20 277.43 -7.54 -37.73 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.79 Total: 6.36 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.19 Total: -6.09 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -1.27 Total: -49.40 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.46 Total: -9.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.20 -7.54 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705668763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.223 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds