Wall clock time and date at job start Mon Mar 30 2020 03:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48531 * 110.99865 * 2 1 4 4 C 1.55099 * 103.28591 * 200.33662 * 3 2 1 5 5 C 1.54594 * 102.84757 * 37.30458 * 4 3 2 6 6 O 1.42907 * 110.30733 * 97.11384 * 5 4 3 7 7 C 1.52997 * 110.31340 * 219.18792 * 5 4 3 8 8 N 1.46899 * 109.47254 * 178.61038 * 7 5 4 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00575 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99722 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99924 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47405 * 59.99892 * 14 12 10 16 16 H 1.48506 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47090 * 299.99898 * 14 12 10 18 18 C 1.47900 * 110.99756 * 242.60726 * 2 1 3 19 19 H 1.09001 * 109.47103 * 177.39614 * 1 2 3 20 20 H 1.09001 * 109.47076 * 297.38885 * 1 2 3 21 21 H 1.08998 * 109.47448 * 57.39628 * 1 2 3 22 22 H 1.08999 * 110.67032 * 318.71581 * 3 2 1 23 23 H 1.09002 * 110.66367 * 81.67968 * 3 2 1 24 24 H 1.09004 * 110.70815 * 278.99738 * 4 3 2 25 25 H 1.09000 * 110.81524 * 155.66570 * 4 3 2 26 26 H 0.96699 * 113.99726 * 181.39025 * 6 5 4 27 27 H 1.09002 * 109.47153 * 58.61035 * 7 5 4 28 28 H 1.09001 * 109.46832 * 298.61225 * 7 5 4 29 29 H 1.00902 * 111.00582 * 303.95797 * 8 7 5 30 30 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 31 31 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 32 32 H 0.96998 * 120.00185 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.92081 * 26.48964 * 18 2 1 34 34 H 1.08999 * 109.91687 * 265.19338 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2122 -0.5246 5 6 3.2982 0.1054 -1.5931 6 8 3.1879 0.6846 -2.8949 7 6 4.4895 -0.8530 -1.5385 8 7 4.3100 -1.9148 -2.5376 9 6 5.4379 -2.8558 -2.5142 10 6 5.2191 -3.9278 -3.5504 11 1 4.3313 -3.9117 -4.1652 12 6 6.1525 -4.9295 -3.7137 13 7 7.2339 -4.9490 -2.9655 14 14 5.8817 -6.2581 -4.9986 15 1 5.7858 -5.6345 -6.3429 16 1 7.0218 -7.2093 -4.9750 17 1 4.6225 -6.9863 -4.6999 18 6 1.9989 -0.6353 -1.2260 19 1 -0.3633 -1.0266 -0.0467 20 1 -0.3633 0.4728 0.9125 21 1 -0.3634 0.5537 -0.8657 22 1 1.4237 2.0205 -0.6729 23 1 2.0013 1.7987 1.0092 24 1 4.1137 0.8863 0.2766 25 1 3.8130 2.1361 -0.9751 26 1 3.0688 0.0382 -3.6042 27 1 4.5539 -1.2963 -0.5447 28 1 5.4071 -0.3046 -1.7518 29 1 3.4341 -2.3964 -2.4002 30 1 6.3618 -2.3211 -2.7346 31 1 5.5092 -3.3129 -1.5273 32 1 7.8903 -5.6538 -3.0801 33 1 1.2757 -0.5402 -2.0359 34 1 2.2122 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705668763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:14 Heat of formation + Delta-G solvation = -72.331583 kcal Electronic energy + Delta-G solvation = -14708.313613 eV Core-core repulsion = 12253.719582 eV Total energy + Delta-G solvation = -2454.594031 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73261 -37.36391 -36.24316 -34.43903 -32.45583 -30.27522 -28.53359 -26.95862 -24.87266 -23.53435 -22.06813 -21.16670 -18.85563 -17.95752 -17.00083 -16.49339 -16.36677 -15.91009 -15.42880 -15.19402 -14.71282 -14.40134 -14.25598 -13.78624 -13.41656 -13.30832 -12.79850 -12.72840 -12.56014 -12.42141 -12.35306 -12.17535 -12.12571 -11.72111 -11.28892 -10.85526 -10.66737 -9.46660 -9.23542 -8.23396 -6.35261 1.41830 1.45445 1.53403 2.39599 2.94694 3.10230 3.30986 3.36413 3.58917 3.76416 4.02544 4.26724 4.33344 4.45762 4.47891 4.64014 4.69964 4.73546 4.86498 4.92890 4.97313 5.03528 5.06410 5.13435 5.23474 5.58137 5.79228 5.97825 6.00872 6.34555 6.62302 6.80684 6.85222 7.35813 8.88207 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050227 B = 0.006083 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.332863 B = 4601.642542 C = 4777.608341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.534 5.534 3 C 0.040 3.960 4 C -0.112 4.112 5 C 0.131 3.869 6 O -0.564 6.564 7 C 0.043 3.957 8 N -0.683 5.683 9 C 0.209 3.791 10 C -0.537 4.537 11 H 0.068 0.932 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.975 3.025 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.016 3.984 19 H 0.070 0.930 20 H 0.084 0.916 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.389 0.611 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.335 0.665 30 H -0.001 1.001 31 H -0.039 1.039 32 H 0.265 0.735 33 H 0.059 0.941 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 10.521 4.891 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.087 4.087 4 C -0.150 4.150 5 C 0.090 3.910 6 O -0.371 6.371 7 C -0.088 4.088 8 N -0.314 5.314 9 C 0.082 3.918 10 C -0.575 4.575 11 H 0.086 0.914 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.799 3.201 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.113 4.113 19 H 0.088 0.912 20 H 0.103 0.897 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.120 0.880 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.239 0.761 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.153 0.847 30 H 0.017 0.983 31 H -0.021 1.021 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.498 11.063 5.209 16.784 hybrid contribution -0.108 -1.463 -0.712 1.631 sum -11.607 9.599 4.496 15.719 Atomic orbital electron populations 1.22578 0.86495 1.02504 1.01738 1.64773 1.09581 1.15643 1.35847 1.23304 0.93933 0.89476 1.02010 1.22577 0.97963 0.98155 0.96313 1.21992 0.92166 0.92508 0.84368 1.86375 1.95725 1.38598 1.16445 1.22560 0.98830 0.93664 0.93708 1.60512 1.05721 1.15161 1.50014 1.19189 0.89236 0.89604 0.93809 1.21509 1.06965 1.09333 1.19724 0.91388 1.25983 0.94594 1.00636 0.98545 1.70089 1.11122 1.34907 1.41374 0.85351 0.77857 0.77942 0.78930 1.19246 1.20899 1.19001 1.23537 0.96147 0.99311 0.92309 0.91166 0.89691 0.95010 0.93147 0.88002 0.89237 0.89343 0.76059 0.95369 0.92086 0.84726 0.98320 1.02137 0.92583 0.92261 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.40 127.69 1.20 1.49 16 2 N -0.53 -12.92 5.55 -908.82 -5.05 -17.96 16 3 C 0.04 0.85 6.56 86.71 0.57 1.42 16 4 C -0.11 -2.76 6.37 31.86 0.20 -2.55 16 5 C 0.13 3.88 1.15 -9.91 -0.01 3.87 16 6 O -0.56 -17.44 12.94 -148.98 -1.93 -19.37 16 7 C 0.04 1.55 4.65 86.30 0.40 1.95 16 8 N -0.68 -28.83 5.92 -517.93 -3.07 -31.90 16 9 C 0.21 11.30 5.44 85.55 0.47 11.76 16 10 C -0.54 -30.51 9.32 25.60 0.24 -30.27 16 11 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 12 C 0.00 0.04 5.46 84.66 0.46 0.50 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 14 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 C 0.02 0.43 5.71 86.45 0.49 0.92 16 19 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.03 0.58 8.00 -2.39 -0.02 0.56 16 22 H 0.05 1.04 7.96 -2.39 -0.02 1.03 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.09 2.14 7.86 -2.39 -0.02 2.12 16 25 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 26 H 0.39 11.42 8.54 -74.06 -0.63 10.79 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.33 13.27 7.10 -89.69 -0.64 12.63 16 30 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.06 1.54 7.55 -2.39 -0.02 1.52 16 34 H 0.07 2.13 6.61 -2.39 -0.02 2.12 16 Total: -1.00 -64.00 277.43 -3.90 -67.90 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.19 Total: 22.69 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.02 Total: -10.91 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -7.83 Total: -106.39 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -1.93 Total: -19.37 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.00 -3.90 -67.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705668763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.432 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds