Wall clock time and date at job start Mon Mar 30 2020 03:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.46299 * 114.00069 * 2 1 4 4 C 1.46899 * 111.00077 * 114.47991 * 3 2 1 5 5 C 1.53003 * 109.46854 * 296.83960 * 4 3 2 6 6 N 1.46904 * 109.46792 * 184.43986 * 5 4 3 7 7 C 1.46907 * 110.99803 * 238.43381 * 3 2 1 8 8 C 1.52998 * 109.47186 * 71.23519 * 7 3 2 9 9 C 1.50697 * 115.55049 * 58.63701 * 8 7 3 10 10 H 1.08002 * 120.00394 * 269.81246 * 9 8 7 11 11 C 1.37880 * 119.99886 * 89.53666 * 9 8 7 12 12 N 1.31509 * 120.00099 * 175.76749 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 355.76233 * 11 9 8 14 14 H 1.48502 * 109.46653 * 92.82463 * 13 11 9 15 15 H 1.48497 * 109.47278 * 212.82204 * 13 11 9 16 16 H 1.48496 * 109.47165 * 332.82435 * 13 11 9 17 17 C 1.53000 * 117.49695 * 204.30723 * 8 7 3 18 18 C 1.52992 * 117.49903 * 272.96502 * 8 7 3 19 19 H 1.08999 * 109.47292 * 64.65414 * 1 2 3 20 20 H 1.09000 * 109.47401 * 184.65660 * 1 2 3 21 21 H 1.09003 * 109.47309 * 304.65324 * 1 2 3 22 22 H 1.09005 * 109.47257 * 56.84020 * 4 3 2 23 23 H 1.08995 * 109.47234 * 176.84082 * 4 3 2 24 24 H 1.08993 * 109.47246 * 304.44447 * 5 4 3 25 25 H 1.09000 * 109.47166 * 64.44599 * 5 4 3 26 26 H 1.00896 * 110.99939 * 56.04764 * 6 5 4 27 27 H 1.00901 * 110.99755 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.46839 * 311.23138 * 7 3 2 29 29 H 1.09001 * 109.47012 * 191.23412 * 7 3 2 30 30 H 0.97002 * 120.00195 * 174.99417 * 12 11 9 31 31 H 1.09005 * 117.49607 * 215.00241 * 17 8 7 32 32 H 1.08999 * 117.49842 * 0.02562 * 17 8 7 33 33 H 1.09003 * 117.49998 * 359.97438 * 18 8 7 34 34 H 1.09001 * 117.49831 * 144.97149 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7573 1.5863 1.2481 5 6 1.7827 1.5547 2.4272 6 7 2.4960 1.9090 3.6616 7 6 2.8940 1.5254 -1.1686 8 6 2.0363 1.6331 -2.4309 9 6 1.0255 2.7508 -2.4365 10 1 0.0282 2.5790 -2.0592 11 6 1.3756 3.9945 -2.9180 12 7 0.4716 4.9460 -3.0005 13 14 3.1340 4.3278 -3.4531 14 1 3.2660 4.0675 -4.9092 15 1 3.4773 5.7447 -3.1705 16 1 4.0564 3.4363 -2.7052 17 6 2.6920 1.2670 -3.7639 18 6 1.6542 0.3316 -3.1386 19 1 -0.3634 0.4399 -0.9287 20 1 -0.3634 -1.0243 0.0834 21 1 -0.3634 0.5843 0.8454 22 1 3.5168 0.8162 1.3837 23 1 3.2362 2.5642 1.1987 24 1 0.9791 2.2703 2.2537 25 1 1.3629 0.5535 2.5248 26 1 2.9488 2.8062 3.5727 27 1 1.8734 1.8956 4.4555 28 1 3.5696 0.6749 -1.2598 29 1 3.4751 2.4393 -1.0450 30 1 0.7322 5.8407 -3.2700 31 1 2.3922 1.8346 -4.6449 32 1 3.7343 0.9489 -3.7415 33 1 2.0142 -0.6014 -2.7051 34 1 0.6715 0.2836 -3.6078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708851898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:06 Heat of formation + Delta-G solvation = 10.516312 kcal Electronic energy + Delta-G solvation = -15228.108668 eV Core-core repulsion = 12777.107191 eV Total energy + Delta-G solvation = -2451.001477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35199 -37.66545 -35.92762 -34.15222 -33.68287 -29.17379 -27.80920 -26.98657 -24.65178 -23.29470 -22.42420 -20.75427 -18.34945 -17.66698 -17.18111 -16.69933 -16.44358 -15.79123 -15.37562 -15.17975 -14.74593 -14.51336 -14.50452 -14.28132 -13.53778 -13.14195 -13.03076 -12.80042 -12.26117 -12.13503 -11.95033 -11.85807 -11.56163 -10.81878 -10.78289 -10.55756 -10.21782 -9.69390 -9.40731 -8.18882 -6.21772 1.38615 1.40918 1.52263 1.81912 2.43652 3.13347 3.19795 3.53905 3.97603 4.11388 4.18813 4.31807 4.43494 4.52155 4.55910 4.66337 4.71239 4.74904 4.86840 4.87909 4.91143 5.02739 5.05479 5.11862 5.36302 5.50405 5.79007 5.98166 6.12244 6.26079 6.46352 6.57827 6.84341 7.44324 8.97260 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027708 B = 0.011127 C = 0.009748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.286082 B = 2515.838497 C = 2871.573705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.272 6.272 3 N -0.357 5.357 4 C 0.042 3.958 5 C 0.079 3.921 6 N -0.850 5.850 7 C 0.088 3.912 8 C -0.010 4.010 9 C -0.450 4.450 10 H 0.031 0.969 11 C 0.016 3.984 12 N -0.955 5.955 13 Si 0.936 3.064 14 H -0.276 1.276 15 H -0.300 1.300 16 H -0.233 1.233 17 C -0.198 4.198 18 C -0.158 4.158 19 H 0.023 0.977 20 H 0.107 0.893 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.347 0.653 27 H 0.354 0.646 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 -7.412 8.198 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.277 6.277 3 N -0.126 5.126 4 C -0.086 4.086 5 C -0.053 4.053 6 N -0.381 5.381 7 C -0.040 4.040 8 C -0.011 4.011 9 C -0.488 4.488 10 H 0.049 0.951 11 C -0.180 4.180 12 N -0.596 5.596 13 Si 0.761 3.239 14 H -0.202 1.202 15 H -0.228 1.228 16 H -0.156 1.156 17 C -0.236 4.236 18 C -0.195 4.195 19 H 0.042 0.958 20 H 0.125 0.875 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.160 0.840 27 H 0.168 0.832 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.608 -7.787 7.931 12.450 hybrid contribution 0.080 1.101 -0.401 1.175 sum 5.688 -6.686 7.530 11.566 Atomic orbital electron populations 1.22572 0.80514 1.01854 0.99751 1.90514 1.21243 1.19081 1.96827 1.67575 1.34727 1.07947 1.02333 1.22406 0.95744 1.01331 0.89156 1.21465 0.94377 1.00525 0.88908 1.58661 1.36596 1.38100 1.04785 1.22022 0.92675 0.99357 0.89941 1.19202 0.97615 0.95298 0.89027 1.20229 0.96624 0.94009 1.37895 0.95111 1.25747 1.00849 0.96099 0.95316 1.70050 1.35349 1.02946 1.51302 0.85959 0.81888 0.76699 0.79335 1.20204 1.22757 1.15606 1.23041 0.97772 1.05088 0.97662 1.22715 0.98246 0.94060 1.04520 0.95776 0.87525 0.94211 0.93458 0.89337 0.95777 0.91244 0.84024 0.83221 0.94084 0.90231 0.92956 0.90780 0.88266 0.88948 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.68 11.47 113.37 1.30 2.98 16 2 O -0.27 -10.07 9.99 -50.16 -0.50 -10.57 16 3 N -0.36 -13.80 4.47 -513.87 -2.30 -16.09 16 4 C 0.04 1.34 5.53 86.30 0.48 1.81 16 5 C 0.08 2.19 6.51 86.30 0.56 2.76 16 6 N -0.85 -18.73 9.62 -186.71 -1.80 -20.53 16 7 C 0.09 3.54 4.87 86.30 0.42 3.96 16 8 C -0.01 -0.46 0.90 -52.93 -0.05 -0.51 16 9 C -0.45 -25.07 9.20 25.60 0.24 -24.84 16 10 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 11 C 0.02 0.89 5.47 84.66 0.46 1.36 16 12 N -0.96 -59.50 13.95 21.45 0.30 -59.20 16 13 Si 0.94 43.84 24.89 68.60 1.71 45.54 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 16 H -0.23 -9.72 5.65 99.48 0.56 -9.16 16 17 C -0.20 -8.06 7.60 30.62 0.23 -7.82 16 18 C -0.16 -6.39 9.70 30.61 0.30 -6.09 16 19 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 20 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 21 H 0.04 1.27 7.86 -2.39 -0.02 1.25 16 22 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.09 2.70 7.94 -2.39 -0.02 2.68 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 1.98 7.86 -2.39 -0.02 1.97 16 26 H 0.35 6.85 8.99 -89.70 -0.81 6.04 16 27 H 0.35 6.28 9.08 -89.69 -0.81 5.47 16 28 H 0.04 1.51 8.11 -2.39 -0.02 1.49 16 29 H 0.08 3.21 6.29 -2.39 -0.02 3.20 16 30 H 0.26 15.39 8.32 -92.71 -0.77 14.62 16 31 H 0.07 3.22 7.17 -2.38 -0.02 3.20 16 32 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -65.02 280.71 0.67 -64.35 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.68 Total: 22.89 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.94 Total: -26.39 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -3.79 Total: -95.82 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.50 Total: -10.57 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.71 Total: 45.54 kcal Total: -65.02 0.67 -64.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708851898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.862 kcal (2) G-P(sol) polarization free energy of solvation -65.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds