Wall clock time and date at job start Mon Mar 30 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99815 * 2 1 4 4 H 1.08995 * 110.88179 * 327.56861 * 3 2 1 5 5 C 1.54907 * 111.00524 * 91.45186 * 3 2 1 6 6 N 1.47424 * 104.83306 * 155.12107 * 5 3 2 7 7 C 1.36929 * 125.64932 * 155.83350 * 6 5 3 8 8 H 1.08004 * 120.00417 * 190.43806 * 7 6 5 9 9 C 1.38814 * 120.00226 * 10.44467 * 7 6 5 10 10 N 1.31621 * 119.99891 * 13.12852 * 9 7 6 11 11 Si 1.86795 * 120.00251 * 193.12963 * 9 7 6 12 12 H 1.48504 * 109.47222 * 94.97553 * 11 9 7 13 13 H 1.48505 * 109.47268 * 214.97563 * 11 9 7 14 14 H 1.48502 * 109.47057 * 334.97773 * 11 9 7 15 15 C 1.47024 * 108.70078 * 335.87241 * 6 5 3 16 16 C 1.52999 * 109.88279 * 241.48668 * 15 6 5 17 17 C 1.53003 * 109.88337 * 120.47620 * 15 6 5 18 18 N 1.46904 * 109.46849 * 61.71289 * 17 15 6 19 19 C 1.54328 * 107.40101 * 0.98095 * 15 6 5 20 20 H 1.09003 * 109.47175 * 300.00079 * 1 2 3 21 21 H 1.08997 * 109.47335 * 60.00207 * 1 2 3 22 22 H 1.08995 * 109.46848 * 180.02562 * 1 2 3 23 23 H 1.09007 * 110.36543 * 36.27904 * 5 3 2 24 24 H 1.09003 * 110.46056 * 274.00958 * 5 3 2 25 25 H 0.96997 * 120.00247 * 179.97438 * 10 9 7 26 26 H 1.09001 * 109.46889 * 298.28708 * 16 15 6 27 27 H 1.09002 * 109.47380 * 58.28331 * 16 15 6 28 28 H 1.08997 * 109.46935 * 178.28483 * 16 15 6 29 29 H 1.09008 * 109.46757 * 301.71687 * 17 15 6 30 30 H 1.08996 * 109.46968 * 181.71840 * 17 15 6 31 31 H 1.00898 * 110.99900 * 56.05102 * 18 17 15 32 32 H 1.00905 * 110.99235 * 180.02562 * 18 17 15 33 33 H 1.09005 * 110.71895 * 140.63665 * 19 15 6 34 34 H 1.08998 * 110.71861 * 263.90548 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3830 2.0101 -0.5461 5 6 2.2695 1.7979 1.4457 6 7 3.3604 2.7815 1.3194 7 6 3.6216 3.8006 2.1960 8 1 4.3340 4.5689 1.9341 9 6 2.9708 3.8461 3.4212 10 7 2.3074 2.7947 3.8535 11 14 3.0364 5.3995 4.4566 12 1 1.8326 6.2259 4.1861 13 1 3.0729 5.0341 5.8955 14 1 4.2559 6.1733 4.1113 15 6 4.1209 2.4876 0.0959 16 6 5.5702 2.1511 0.4524 17 6 4.0831 3.6951 -0.8430 18 7 4.7150 4.8467 -0.1852 19 6 3.4519 1.2738 -0.5829 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 2.5793 0.9670 2.0796 24 1 1.3764 2.2721 1.8527 25 1 1.8529 2.8263 4.7098 26 1 6.0343 3.0105 0.9362 27 1 5.5890 1.2982 1.1309 28 1 6.1200 1.9048 -0.4560 29 1 3.0475 3.9367 -1.0826 30 1 4.6228 3.4592 -1.7601 31 1 5.6558 4.6260 0.1049 32 1 4.7022 5.6577 -0.7855 33 1 3.4352 1.3982 -1.6657 34 1 3.9601 0.3496 -0.3077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708919383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:42 Heat of formation + Delta-G solvation = -12.290462 kcal Electronic energy + Delta-G solvation = -15598.449122 eV Core-core repulsion = 13146.458669 eV Total energy + Delta-G solvation = -2451.990453 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.72135 -36.56750 -33.34744 -32.09689 -29.29135 -28.97906 -26.10328 -25.34648 -24.23727 -22.68252 -20.28433 -18.47746 -16.58786 -16.07606 -15.20974 -15.06040 -14.18306 -14.09610 -13.93872 -13.38169 -13.10152 -12.67683 -12.09646 -11.91451 -11.79060 -11.34910 -11.15485 -10.80603 -10.74509 -10.61499 -10.44658 -10.14248 -9.80846 -9.63028 -9.54893 -8.77691 -8.37168 -7.75778 -6.63989 -5.52166 -2.81650 3.53470 3.59311 3.61596 4.26976 4.69780 5.16252 5.45126 5.49368 5.53643 5.66185 5.72858 5.81190 5.88243 5.96925 6.01492 6.02032 6.13716 6.15140 6.40922 6.48652 6.61813 6.66662 6.89006 7.13343 7.41936 7.64419 7.82731 7.95459 8.03897 8.21112 8.44125 9.44861 10.04817 10.68627 11.62347 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024836 B = 0.013438 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.143933 B = 2083.181291 C = 2861.966591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.385 6.385 3 C 0.055 3.945 4 H 0.059 0.941 5 C 0.157 3.843 6 N -0.574 5.574 7 C -0.194 4.194 8 H 0.104 0.896 9 C -0.024 4.024 10 N -0.929 5.929 11 Si 0.906 3.094 12 H -0.295 1.295 13 H -0.298 1.298 14 H -0.282 1.282 15 C 0.182 3.818 16 C -0.150 4.150 17 C 0.067 3.933 18 N -0.825 5.825 19 C -0.114 4.114 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.247 0.753 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.006 0.994 31 H 0.334 0.666 32 H 0.322 0.678 33 H 0.062 0.938 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -1.654 -9.889 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.304 6.304 3 C -0.003 4.003 4 H 0.077 0.923 5 C 0.032 3.968 6 N -0.297 5.297 7 C -0.323 4.323 8 H 0.122 0.878 9 C -0.219 4.219 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.223 1.223 13 H -0.226 1.226 14 H -0.207 1.207 15 C 0.092 3.908 16 C -0.209 4.209 17 C -0.066 4.066 18 N -0.355 5.355 19 C -0.152 4.152 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.525 -1.828 -9.119 9.315 hybrid contribution 0.360 0.971 -0.133 1.044 sum 0.884 -0.856 -9.252 9.333 Atomic orbital electron populations 1.22657 0.81981 1.01679 0.99816 1.87811 1.18959 1.28447 1.95141 1.23808 0.93265 0.83161 1.00103 0.92336 1.21761 0.92923 0.92493 0.89657 1.44362 1.29867 1.32904 1.22591 1.19584 1.20556 0.98968 0.93175 0.87833 1.24846 1.02460 0.97379 0.97192 1.70007 1.40009 1.27222 1.20567 0.86151 0.77454 0.83275 0.79251 1.22298 1.22552 1.20724 1.20317 0.91611 0.90475 0.88411 1.22211 0.97475 1.01804 0.99443 1.22286 0.98381 0.92291 0.93630 1.58712 1.24812 1.06074 1.45899 1.22687 0.95161 0.98811 0.98573 0.93776 0.94894 0.90489 0.94554 0.91907 0.94326 0.92366 0.92767 0.94750 0.91901 0.97559 0.85169 0.86635 0.91975 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.89 101.05 1.10 1.65 16 2 O -0.39 -7.42 10.52 -35.23 -0.37 -7.79 16 3 C 0.06 1.11 3.50 -24.37 -0.09 1.02 16 4 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 5 C 0.16 3.92 5.15 -2.53 -0.01 3.91 16 6 N -0.57 -14.29 2.88 -155.36 -0.45 -14.74 16 7 C -0.19 -5.31 9.06 -15.06 -0.14 -5.45 16 8 H 0.10 2.75 5.92 -52.48 -0.31 2.44 16 9 C -0.02 -0.70 5.35 -17.43 -0.09 -0.80 16 10 N -0.93 -28.10 10.85 55.49 0.60 -27.50 16 11 Si 0.91 22.98 29.57 -169.99 -5.03 17.96 16 12 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 13 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.18 3.64 0.83 -130.84 -0.11 3.54 16 16 C -0.15 -2.80 8.11 37.16 0.30 -2.50 16 17 C 0.07 1.19 5.80 -3.82 -0.02 1.17 16 18 N -0.83 -14.44 6.97 -10.36 -0.07 -14.51 16 19 C -0.11 -2.09 5.79 -24.69 -0.14 -2.24 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.03 0.45 8.11 -51.93 -0.42 0.02 16 22 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.04 1.02 8.04 -51.92 -0.42 0.60 16 24 H 0.06 1.74 7.08 -51.93 -0.37 1.37 16 25 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.06 1.11 6.45 -51.93 -0.33 0.78 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.33 5.56 7.01 -39.29 -0.28 5.28 16 32 H 0.32 4.72 9.08 -39.29 -0.36 4.37 16 33 H 0.06 0.98 7.83 -51.93 -0.41 0.58 16 34 H 0.07 1.40 7.85 -51.93 -0.41 0.99 16 LS Contribution 269.01 15.07 4.05 4.05 Total: -1.00 -31.15 269.01 -5.84 -36.99 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.38 Total: 5.24 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.80 Total: 0.30 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.08 Total: -56.75 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.37 Total: -7.79 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.96 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.15 -5.84 -36.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.702 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds