Wall clock time and date at job start Mon Mar 30 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99815 * 2 1 4 4 H 1.08995 * 110.88179 * 327.56861 * 3 2 1 5 5 C 1.54907 * 111.00524 * 91.45186 * 3 2 1 6 6 N 1.47424 * 104.83306 * 155.12107 * 5 3 2 7 7 C 1.36929 * 125.64932 * 155.83350 * 6 5 3 8 8 H 1.08004 * 120.00417 * 190.43806 * 7 6 5 9 9 C 1.38814 * 120.00226 * 10.44467 * 7 6 5 10 10 N 1.31621 * 119.99891 * 13.12852 * 9 7 6 11 11 Si 1.86795 * 120.00251 * 193.12963 * 9 7 6 12 12 H 1.48504 * 109.47222 * 94.97553 * 11 9 7 13 13 H 1.48505 * 109.47268 * 214.97563 * 11 9 7 14 14 H 1.48502 * 109.47057 * 334.97773 * 11 9 7 15 15 C 1.47024 * 108.70078 * 335.87241 * 6 5 3 16 16 C 1.52999 * 109.88279 * 241.48668 * 15 6 5 17 17 C 1.53003 * 109.88337 * 120.47620 * 15 6 5 18 18 N 1.46904 * 109.46849 * 61.71289 * 17 15 6 19 19 C 1.54328 * 107.40101 * 0.98095 * 15 6 5 20 20 H 1.09003 * 109.47175 * 300.00079 * 1 2 3 21 21 H 1.08997 * 109.47335 * 60.00207 * 1 2 3 22 22 H 1.08995 * 109.46848 * 180.02562 * 1 2 3 23 23 H 1.09007 * 110.36543 * 36.27904 * 5 3 2 24 24 H 1.09003 * 110.46056 * 274.00958 * 5 3 2 25 25 H 0.96997 * 120.00247 * 179.97438 * 10 9 7 26 26 H 1.09001 * 109.46889 * 298.28708 * 16 15 6 27 27 H 1.09002 * 109.47380 * 58.28331 * 16 15 6 28 28 H 1.08997 * 109.46935 * 178.28483 * 16 15 6 29 29 H 1.09008 * 109.46757 * 301.71687 * 17 15 6 30 30 H 1.08996 * 109.46968 * 181.71840 * 17 15 6 31 31 H 1.00898 * 110.99900 * 56.05102 * 18 17 15 32 32 H 1.00905 * 110.99235 * 180.02562 * 18 17 15 33 33 H 1.09005 * 110.71895 * 140.63665 * 19 15 6 34 34 H 1.08998 * 110.71861 * 263.90548 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3830 2.0101 -0.5461 5 6 2.2695 1.7979 1.4457 6 7 3.3604 2.7815 1.3194 7 6 3.6216 3.8006 2.1960 8 1 4.3340 4.5689 1.9341 9 6 2.9708 3.8461 3.4212 10 7 2.3074 2.7947 3.8535 11 14 3.0364 5.3995 4.4566 12 1 1.8326 6.2259 4.1861 13 1 3.0729 5.0341 5.8955 14 1 4.2559 6.1733 4.1113 15 6 4.1209 2.4876 0.0959 16 6 5.5702 2.1511 0.4524 17 6 4.0831 3.6951 -0.8430 18 7 4.7150 4.8467 -0.1852 19 6 3.4519 1.2738 -0.5829 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 2.5793 0.9670 2.0796 24 1 1.3764 2.2721 1.8527 25 1 1.8529 2.8263 4.7098 26 1 6.0343 3.0105 0.9362 27 1 5.5890 1.2982 1.1309 28 1 6.1200 1.9048 -0.4560 29 1 3.0475 3.9367 -1.0826 30 1 4.6228 3.4592 -1.7601 31 1 5.6558 4.6260 0.1049 32 1 4.7022 5.6577 -0.7855 33 1 3.4352 1.3982 -1.6657 34 1 3.9601 0.3496 -0.3077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708919383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:42 Heat of formation + Delta-G solvation = -35.601545 kcal Electronic energy + Delta-G solvation = -15599.459966 eV Core-core repulsion = 13146.458669 eV Total energy + Delta-G solvation = -2453.001297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35740 -38.07655 -35.06668 -33.89032 -30.99080 -30.76894 -27.49671 -27.02507 -25.95263 -24.39078 -22.01901 -20.19672 -18.45095 -17.61252 -16.95507 -16.53481 -15.96865 -15.63300 -15.44658 -14.98255 -14.68193 -14.37142 -13.71473 -13.61381 -13.45050 -12.97449 -12.76569 -12.65413 -12.48564 -12.30125 -12.04577 -11.94165 -11.56786 -11.46857 -11.22243 -10.55331 -10.34282 -9.16810 -8.65681 -7.67893 -4.97652 1.50124 1.51749 1.60773 2.59925 2.85981 3.49959 3.73246 3.87087 3.97959 4.11988 4.21118 4.32627 4.51248 4.52462 4.58866 4.65371 4.77933 4.83949 4.91191 4.98917 5.10979 5.12739 5.36033 5.38442 5.62872 5.70089 6.00885 6.32738 6.40883 6.57674 6.87447 7.29839 7.98969 8.62184 9.46060 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024836 B = 0.013438 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.143933 B = 2083.181291 C = 2861.966591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.069 3.931 4 H 0.071 0.929 5 C 0.166 3.834 6 N -0.591 5.591 7 C -0.178 4.178 8 H 0.115 0.885 9 C -0.094 4.094 10 N -0.967 5.967 11 Si 0.965 3.035 12 H -0.300 1.300 13 H -0.309 1.309 14 H -0.265 1.265 15 C 0.168 3.832 16 C -0.143 4.143 17 C 0.075 3.925 18 N -0.846 5.846 19 C -0.106 4.106 20 H 0.026 0.974 21 H 0.057 0.943 22 H 0.105 0.895 23 H -0.009 1.009 24 H 0.023 0.977 25 H 0.235 0.765 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.340 0.660 32 H 0.340 0.660 33 H 0.101 0.899 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -1.131 -12.527 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.011 3.989 4 H 0.089 0.911 5 C 0.040 3.960 6 N -0.314 5.314 7 C -0.308 4.308 8 H 0.132 0.868 9 C -0.284 4.284 10 N -0.619 5.619 11 Si 0.797 3.203 12 H -0.228 1.228 13 H -0.237 1.237 14 H -0.189 1.189 15 C 0.080 3.920 16 C -0.202 4.202 17 C -0.057 4.057 18 N -0.378 5.378 19 C -0.144 4.144 20 H 0.044 0.956 21 H 0.075 0.925 22 H 0.123 0.877 23 H 0.009 0.991 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.499 -1.289 -11.812 11.976 hybrid contribution 0.080 0.768 0.620 0.990 sum 1.579 -0.521 -11.192 11.315 Atomic orbital electron populations 1.22905 0.80029 1.03717 1.00106 1.87796 1.21166 1.27759 1.94999 1.23541 0.95021 0.83846 0.96524 0.91078 1.21462 0.91425 0.90852 0.92311 1.44610 1.30829 1.32248 1.23759 1.19983 1.18799 0.99154 0.92892 0.86768 1.25595 1.03815 0.99866 0.99092 1.70222 1.42026 1.29107 1.20558 0.85195 0.77660 0.80320 0.77148 1.22795 1.23722 1.18918 1.20723 0.91794 0.92505 0.86980 1.22110 0.96947 1.00474 1.00685 1.22086 0.98484 0.91059 0.94118 1.58588 1.25291 1.06885 1.47036 1.22706 0.93186 0.97905 1.00585 0.95556 0.92467 0.87692 0.99115 0.95902 0.95550 0.93083 0.95206 0.90755 0.92970 0.93743 0.84593 0.84645 0.88013 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.89 113.37 1.23 2.07 16 2 O -0.40 -14.92 10.52 -148.98 -1.57 -16.48 16 3 C 0.07 2.72 3.50 32.12 0.11 2.84 16 4 H 0.07 2.62 7.90 -2.39 -0.02 2.60 16 5 C 0.17 8.54 5.15 86.85 0.45 8.99 16 6 N -0.59 -29.49 2.88 -645.45 -1.86 -31.34 16 7 C -0.18 -9.79 9.06 84.04 0.76 -9.02 16 8 H 0.11 5.93 5.92 -2.91 -0.02 5.91 16 9 C -0.09 -5.50 5.35 84.86 0.45 -5.05 16 10 N -0.97 -61.26 10.85 21.65 0.23 -61.03 16 11 Si 0.96 48.24 29.57 68.60 2.03 50.27 16 12 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 13 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 14 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 15 C 0.17 6.35 0.83 3.95 0.00 6.36 16 16 C -0.14 -5.01 8.11 71.98 0.58 -4.43 16 17 C 0.07 2.38 5.80 86.30 0.50 2.89 16 18 N -0.85 -26.97 6.97 -186.70 -1.30 -28.27 16 19 C -0.11 -3.58 5.79 31.92 0.18 -3.40 16 20 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 22 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 23 H -0.01 -0.54 8.04 -2.38 -0.02 -0.56 16 24 H 0.02 1.32 7.08 -2.39 -0.02 1.31 16 25 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 26 H 0.05 1.84 6.45 -2.39 -0.02 1.83 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.34 10.22 7.01 -89.70 -0.63 9.59 16 32 H 0.34 8.81 9.08 -89.69 -0.81 7.99 16 33 H 0.10 2.69 7.83 -2.38 -0.02 2.67 16 34 H 0.07 2.51 7.85 -2.39 -0.02 2.49 16 Total: -1.00 -69.65 269.01 1.47 -68.18 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.35 Total: 17.43 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.28 Total: 1.24 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -2.92 Total: -120.64 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.57 Total: -16.48 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -69.65 1.47 -68.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.581 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds