Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99807 * 2 1 4 4 H 1.09001 * 110.88476 * 26.12312 * 3 2 1 5 5 C 1.54684 * 111.13954 * 262.38753 * 3 2 1 6 6 N 1.47426 * 104.94160 * 205.09700 * 5 3 2 7 7 C 1.36939 * 125.64704 * 204.07416 * 6 5 3 8 8 H 1.07995 * 119.99943 * 169.76461 * 7 6 5 9 9 C 1.38813 * 120.00151 * 349.76361 * 7 6 5 10 10 N 1.31620 * 119.99523 * 329.74149 * 9 7 6 11 11 Si 1.86793 * 120.00231 * 149.73627 * 9 7 6 12 12 H 1.48502 * 109.47344 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.47494 * 300.00431 * 11 9 7 14 14 H 1.48504 * 109.46917 * 60.00078 * 11 9 7 15 15 C 1.47021 * 108.70507 * 23.80578 * 6 5 3 16 16 C 1.53000 * 109.88316 * 118.58928 * 15 6 5 17 17 C 1.53000 * 109.88283 * 239.75546 * 15 6 5 18 18 N 1.46904 * 109.46891 * 303.54244 * 17 15 6 19 19 C 1.54323 * 107.26931 * 359.17133 * 15 6 5 20 20 H 1.08998 * 109.47095 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47391 * 299.99873 * 1 2 3 22 22 H 1.09004 * 109.46880 * 59.99960 * 1 2 3 23 23 H 1.08994 * 110.39566 * 86.17895 * 5 3 2 24 24 H 1.09005 * 110.23748 * 323.92581 * 5 3 2 25 25 H 0.97002 * 120.00522 * 353.96293 * 10 9 7 26 26 H 1.08997 * 109.47374 * 61.44963 * 16 15 6 27 27 H 1.08994 * 109.47296 * 181.45644 * 16 15 6 28 28 H 1.09003 * 109.46781 * 301.45620 * 16 15 6 29 29 H 1.08997 * 109.47510 * 63.54310 * 17 15 6 30 30 H 1.09000 * 109.46738 * 183.54995 * 17 15 6 31 31 H 1.00898 * 110.99898 * 179.97438 * 18 17 15 32 32 H 1.00899 * 111.00050 * 303.95281 * 18 17 15 33 33 H 1.09001 * 110.72166 * 96.17010 * 19 15 6 34 34 H 1.09003 * 110.71808 * 219.44560 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0324 0.4484 5 6 2.4117 1.7374 -1.4300 6 7 3.4904 2.7242 -1.2403 7 6 3.8414 3.7040 -2.1303 8 1 4.5316 4.4802 -1.8344 9 6 3.3100 3.6996 -3.4126 10 7 2.9889 2.5602 -3.9880 11 14 3.0504 5.3106 -4.3217 12 1 2.4756 5.0352 -5.6630 13 1 2.1173 6.1700 -3.5497 14 1 4.3527 6.0076 -4.4754 15 6 4.1229 2.4862 0.0654 16 6 5.5990 2.1332 -0.1280 17 6 3.9936 3.7339 0.9414 18 7 4.5817 4.8851 0.2435 19 6 3.3824 1.3033 0.7243 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.5644 2.1951 -1.9406 24 1 2.7774 0.8795 -1.9943 25 1 3.2036 1.7199 -3.5534 26 1 6.1126 2.9677 -0.6055 27 1 6.0547 1.9330 0.8417 28 1 5.6812 1.2475 -0.7580 29 1 2.9402 3.9298 1.1417 30 1 4.5187 3.5728 1.8829 31 1 4.5083 5.7224 0.8018 32 1 5.5409 4.7025 -0.0106 33 1 3.9122 0.3680 0.5439 34 1 3.2546 1.4756 1.7930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708919384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = -11.400019 kcal Electronic energy + Delta-G solvation = -15641.983231 eV Core-core repulsion = 13190.031391 eV Total energy + Delta-G solvation = -2451.951841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.92190 -36.71238 -33.54357 -32.25847 -29.46006 -28.82373 -26.20937 -25.44730 -24.22871 -22.60775 -20.34505 -18.73973 -17.07344 -16.24956 -15.20562 -15.11082 -14.48060 -14.14494 -13.65782 -13.47172 -13.20127 -12.87942 -12.45761 -12.07282 -11.76168 -11.40959 -11.37706 -10.98211 -10.78499 -10.47671 -10.35083 -10.07062 -9.89573 -9.75679 -9.41477 -8.91275 -8.16205 -7.77849 -6.77993 -5.79308 -2.77976 3.64744 3.70569 3.88076 4.11534 4.79145 5.10808 5.29955 5.38480 5.39876 5.54155 5.59385 5.72471 5.72727 5.85457 5.87591 5.91936 6.02369 6.07790 6.28820 6.35118 6.49799 6.55211 6.77514 6.90260 7.10583 7.12638 7.68439 7.81260 8.06282 8.16798 8.84068 9.27503 10.11829 10.59235 11.51822 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.013496 C = 0.010044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.677220 B = 2074.162381 C = 2786.975125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.066 3.934 4 H 0.064 0.936 5 C 0.130 3.870 6 N -0.574 5.574 7 C -0.298 4.298 8 H 0.096 0.904 9 C -0.043 4.043 10 N -0.933 5.933 11 Si 1.058 2.942 12 H -0.293 1.293 13 H -0.299 1.299 14 H -0.298 1.298 15 C 0.183 3.817 16 C -0.149 4.149 17 C 0.069 3.931 18 N -0.819 5.819 19 C -0.117 4.117 20 H 0.079 0.921 21 H 0.035 0.965 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.032 0.968 25 H 0.265 0.735 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.006 0.994 31 H 0.320 0.680 32 H 0.335 0.665 33 H 0.075 0.925 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -1.034 10.754 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.007 3.993 4 H 0.082 0.918 5 C 0.003 3.997 6 N -0.299 5.299 7 C -0.426 4.426 8 H 0.113 0.887 9 C -0.242 4.242 10 N -0.577 5.577 11 Si 0.889 3.111 12 H -0.219 1.219 13 H -0.227 1.227 14 H -0.225 1.225 15 C 0.093 3.907 16 C -0.208 4.208 17 C -0.064 4.064 18 N -0.349 5.349 19 C -0.155 4.155 20 H 0.098 0.902 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.024 0.976 31 H 0.131 0.869 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.482 -0.566 8.716 8.860 hybrid contribution 1.034 -0.377 2.205 2.465 sum -0.448 -0.944 10.922 10.971 Atomic orbital electron populations 1.22706 0.81792 1.01960 0.99826 1.87837 1.19104 1.28219 1.95044 1.23471 0.93885 0.83351 0.98555 0.91825 1.21850 0.92525 0.92987 0.92300 1.44432 1.34184 1.35691 1.15607 1.20206 1.28141 1.01943 0.92283 0.88668 1.25527 1.01521 1.03313 0.93801 1.70775 1.50922 0.97782 1.38219 0.83604 0.76031 0.75872 0.75554 1.21896 1.22727 1.22537 1.20296 0.91954 0.90658 0.87749 1.22192 0.97649 1.01748 0.99206 1.22237 0.98613 0.92447 0.93104 1.58782 1.24063 1.04243 1.47778 1.22681 0.95348 0.99110 0.98398 0.90216 0.94645 0.93913 0.92962 0.95072 0.92385 0.92414 0.94605 0.92980 0.92138 0.97632 0.86856 0.85133 0.90592 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.15 10.52 -35.23 -0.37 -7.52 16 3 C 0.07 1.29 3.53 -24.70 -0.09 1.21 16 4 H 0.06 1.20 7.83 -51.93 -0.41 0.79 16 5 C 0.13 3.15 4.95 -2.65 -0.01 3.14 16 6 N -0.57 -14.22 2.83 -155.51 -0.44 -14.66 16 7 C -0.30 -8.20 8.74 -15.06 -0.13 -8.33 16 8 H 0.10 2.57 5.77 -52.49 -0.30 2.27 16 9 C -0.04 -1.25 5.04 -17.43 -0.09 -1.34 16 10 N -0.93 -29.06 12.76 55.49 0.71 -28.35 16 11 Si 1.06 26.56 30.01 -169.99 -5.10 21.46 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 15 C 0.18 3.67 0.84 -130.84 -0.11 3.56 16 16 C -0.15 -2.80 8.22 37.16 0.31 -2.50 16 17 C 0.07 1.24 5.80 -3.82 -0.02 1.21 16 18 N -0.82 -14.76 6.87 -10.37 -0.07 -14.83 16 19 C -0.12 -2.12 5.76 -24.90 -0.14 -2.26 16 20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 1.41 7.62 -51.93 -0.40 1.01 16 24 H 0.03 0.84 6.96 -51.93 -0.36 0.48 16 25 H 0.26 8.31 6.03 -40.82 -0.25 8.07 16 26 H 0.06 1.13 6.58 -51.93 -0.34 0.79 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.32 4.83 9.08 -39.29 -0.36 4.48 16 32 H 0.33 5.83 6.97 -39.29 -0.27 5.56 16 33 H 0.08 1.38 7.85 -51.93 -0.41 0.97 16 34 H 0.06 1.00 7.83 -51.93 -0.41 0.60 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -31.80 267.51 -5.69 -37.49 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.25 Total: 6.09 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.81 Total: -3.72 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.20 Total: -57.84 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.37 Total: -7.52 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -5.10 Total: 21.46 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.80 -5.69 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.092 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds