Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99807 * 2 1 4 4 H 1.09001 * 110.88476 * 26.12312 * 3 2 1 5 5 C 1.54684 * 111.13954 * 262.38753 * 3 2 1 6 6 N 1.47426 * 104.94160 * 205.09700 * 5 3 2 7 7 C 1.36939 * 125.64704 * 204.07416 * 6 5 3 8 8 H 1.07995 * 119.99943 * 169.76461 * 7 6 5 9 9 C 1.38813 * 120.00151 * 349.76361 * 7 6 5 10 10 N 1.31620 * 119.99523 * 329.74149 * 9 7 6 11 11 Si 1.86793 * 120.00231 * 149.73627 * 9 7 6 12 12 H 1.48502 * 109.47344 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.47494 * 300.00431 * 11 9 7 14 14 H 1.48504 * 109.46917 * 60.00078 * 11 9 7 15 15 C 1.47021 * 108.70507 * 23.80578 * 6 5 3 16 16 C 1.53000 * 109.88316 * 118.58928 * 15 6 5 17 17 C 1.53000 * 109.88283 * 239.75546 * 15 6 5 18 18 N 1.46904 * 109.46891 * 303.54244 * 17 15 6 19 19 C 1.54323 * 107.26931 * 359.17133 * 15 6 5 20 20 H 1.08998 * 109.47095 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47391 * 299.99873 * 1 2 3 22 22 H 1.09004 * 109.46880 * 59.99960 * 1 2 3 23 23 H 1.08994 * 110.39566 * 86.17895 * 5 3 2 24 24 H 1.09005 * 110.23748 * 323.92581 * 5 3 2 25 25 H 0.97002 * 120.00522 * 353.96293 * 10 9 7 26 26 H 1.08997 * 109.47374 * 61.44963 * 16 15 6 27 27 H 1.08994 * 109.47296 * 181.45644 * 16 15 6 28 28 H 1.09003 * 109.46781 * 301.45620 * 16 15 6 29 29 H 1.08997 * 109.47510 * 63.54310 * 17 15 6 30 30 H 1.09000 * 109.46738 * 183.54995 * 17 15 6 31 31 H 1.00898 * 110.99898 * 179.97438 * 18 17 15 32 32 H 1.00899 * 111.00050 * 303.95281 * 18 17 15 33 33 H 1.09001 * 110.72166 * 96.17010 * 19 15 6 34 34 H 1.09003 * 110.71808 * 219.44560 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0324 0.4484 5 6 2.4117 1.7374 -1.4300 6 7 3.4904 2.7242 -1.2403 7 6 3.8414 3.7040 -2.1303 8 1 4.5316 4.4802 -1.8344 9 6 3.3100 3.6996 -3.4126 10 7 2.9889 2.5602 -3.9880 11 14 3.0504 5.3106 -4.3217 12 1 2.4756 5.0352 -5.6630 13 1 2.1173 6.1700 -3.5497 14 1 4.3527 6.0076 -4.4754 15 6 4.1229 2.4862 0.0654 16 6 5.5990 2.1332 -0.1280 17 6 3.9936 3.7339 0.9414 18 7 4.5817 4.8851 0.2435 19 6 3.3824 1.3033 0.7243 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.5644 2.1951 -1.9406 24 1 2.7774 0.8795 -1.9943 25 1 3.2036 1.7199 -3.5534 26 1 6.1126 2.9677 -0.6055 27 1 6.0547 1.9330 0.8417 28 1 5.6812 1.2475 -0.7580 29 1 2.9402 3.9298 1.1417 30 1 4.5187 3.5728 1.8829 31 1 4.5083 5.7224 0.8018 32 1 5.5409 4.7025 -0.0106 33 1 3.9122 0.3680 0.5439 34 1 3.2546 1.4756 1.7930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708919384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = -35.244180 kcal Electronic energy + Delta-G solvation = -15643.017192 eV Core-core repulsion = 13190.031391 eV Total energy + Delta-G solvation = -2452.985801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54673 -38.19374 -35.31420 -34.00432 -31.05651 -30.70424 -27.52953 -27.15079 -25.90244 -24.35711 -22.05352 -20.53110 -18.94118 -17.74401 -16.82677 -16.59013 -15.97955 -15.67644 -15.39146 -15.23043 -14.76256 -14.55926 -14.06854 -13.64193 -13.48804 -13.03457 -12.76920 -12.56305 -12.47748 -12.20832 -12.05930 -11.86397 -11.72166 -11.40946 -11.34998 -10.49276 -10.29646 -9.20496 -8.82632 -8.01037 -4.96837 1.61544 1.70795 1.88329 2.63666 2.85108 3.41045 3.57742 3.74114 3.88402 3.99944 4.08683 4.19805 4.41363 4.43249 4.50537 4.54169 4.70848 4.76970 4.81190 4.86923 4.97788 4.99190 5.05092 5.14173 5.27353 5.55100 6.10530 6.25728 6.50012 6.58785 6.85838 7.12571 7.99596 8.52106 9.28747 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.013496 C = 0.010044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.677220 B = 2074.162381 C = 2786.975125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.081 3.919 4 H 0.077 0.923 5 C 0.136 3.864 6 N -0.592 5.592 7 C -0.276 4.276 8 H 0.104 0.896 9 C -0.113 4.113 10 N -0.974 5.974 11 Si 1.107 2.893 12 H -0.307 1.307 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.169 3.831 16 C -0.142 4.142 17 C 0.076 3.924 18 N -0.841 5.841 19 C -0.108 4.108 20 H 0.106 0.894 21 H 0.060 0.940 22 H 0.028 0.972 23 H 0.012 0.988 24 H -0.006 1.006 25 H 0.247 0.753 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.338 0.662 32 H 0.338 0.662 33 H 0.073 0.927 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -0.258 13.485 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.022 3.978 4 H 0.094 0.906 5 C 0.009 3.991 6 N -0.317 5.317 7 C -0.406 4.406 8 H 0.122 0.878 9 C -0.304 4.304 10 N -0.621 5.621 11 Si 0.935 3.065 12 H -0.235 1.235 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.081 3.919 16 C -0.201 4.201 17 C -0.057 4.057 18 N -0.373 5.373 19 C -0.147 4.147 20 H 0.125 0.875 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.031 0.969 24 H 0.012 0.988 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.101 0.227 11.511 11.566 hybrid contribution 0.938 -0.661 1.437 1.839 sum -0.163 -0.435 12.948 12.956 Atomic orbital electron populations 1.22974 0.79712 1.03985 1.00317 1.87823 1.21437 1.27463 1.94904 1.23225 0.95302 0.84182 0.95093 0.90554 1.21650 0.91131 0.91388 0.94924 1.44676 1.34947 1.35159 1.16888 1.20538 1.26098 1.01812 0.92139 0.87842 1.26710 1.03046 1.04952 0.95735 1.70890 1.54435 0.97781 1.39036 0.82898 0.76765 0.72948 0.73842 1.23457 1.21805 1.20375 1.20710 0.92389 0.92841 0.85934 1.22098 0.97008 1.00170 1.00806 1.22068 0.98800 0.90991 0.93793 1.58650 1.24389 1.05266 1.48985 1.22689 0.93627 0.98147 1.00187 0.87550 0.92172 0.95331 0.96948 0.98845 0.94317 0.93499 0.90622 0.95355 0.92810 0.93875 0.84824 0.84835 0.90858 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.85 113.37 1.23 1.95 16 2 O -0.40 -14.36 10.52 -148.98 -1.57 -15.93 16 3 C 0.08 3.08 3.53 31.91 0.11 3.19 16 4 H 0.08 2.72 7.83 -2.39 -0.02 2.70 16 5 C 0.14 6.83 4.95 86.78 0.43 7.26 16 6 N -0.59 -29.41 2.83 -645.92 -1.83 -31.23 16 7 C -0.28 -15.29 8.74 84.03 0.73 -14.55 16 8 H 0.10 5.49 5.77 -2.91 -0.02 5.47 16 9 C -0.11 -6.71 5.04 84.86 0.43 -6.28 16 10 N -0.97 -63.46 12.76 21.65 0.28 -63.18 16 11 Si 1.11 54.66 30.01 68.60 2.06 56.72 16 12 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 C 0.17 6.41 0.84 3.95 0.00 6.41 16 16 C -0.14 -5.05 8.22 71.98 0.59 -4.45 16 17 C 0.08 2.44 5.80 86.30 0.50 2.94 16 18 N -0.84 -27.84 6.87 -186.71 -1.28 -29.13 16 19 C -0.11 -3.61 5.76 31.78 0.18 -3.43 16 20 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 21 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 22 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.01 0.69 7.62 -2.39 -0.02 0.68 16 24 H -0.01 -0.35 6.96 -2.38 -0.02 -0.37 16 25 H 0.25 16.47 6.03 -92.71 -0.56 15.91 16 26 H 0.05 1.75 6.58 -2.39 -0.02 1.73 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.34 9.10 9.08 -89.70 -0.81 8.29 16 32 H 0.34 10.84 6.97 -89.69 -0.62 10.21 16 33 H 0.07 2.49 7.85 -2.39 -0.02 2.47 16 34 H 0.10 2.70 7.83 -2.39 -0.02 2.68 16 Total: -1.00 -71.15 267.51 1.74 -69.42 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.14 Total: 20.30 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 4.21 Total: -6.96 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -2.83 Total: -123.54 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.57 Total: -15.93 kcal Atomic # 14 Polarization: 54.66 SS G_CDS: 2.06 Total: 56.72 kcal Total: -71.15 1.74 -69.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.174 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds