Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00300 * 2 1 4 4 H 1.09007 * 110.91543 * 32.44456 * 3 2 1 5 5 C 1.54910 * 111.00645 * 268.54541 * 3 2 1 6 6 N 1.47416 * 104.83594 * 204.91520 * 5 3 2 7 7 C 1.36939 * 125.65206 * 204.16345 * 6 5 3 8 8 H 1.07998 * 120.00089 * 179.97438 * 7 6 5 9 9 C 1.38813 * 119.99827 * 359.95495 * 7 6 5 10 10 N 1.31619 * 119.99779 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00014 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47338 * 60.00216 * 11 9 7 13 13 H 1.48503 * 109.47429 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47245 * 300.00007 * 11 9 7 15 15 C 1.47033 * 108.70291 * 24.12536 * 6 5 3 16 16 C 1.53001 * 109.88039 * 239.37125 * 15 6 5 17 17 C 1.52998 * 109.88191 * 118.35865 * 15 6 5 18 18 N 1.46906 * 109.47020 * 61.71873 * 17 15 6 19 19 C 1.54325 * 107.39933 * 358.86522 * 15 6 5 20 20 H 1.09002 * 109.46648 * 59.99874 * 1 2 3 21 21 H 1.08990 * 109.47339 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47043 * 300.00633 * 1 2 3 23 23 H 1.08999 * 110.36594 * 86.07551 * 5 3 2 24 24 H 1.09000 * 110.36638 * 323.75619 * 5 3 2 25 25 H 0.97004 * 119.99764 * 179.97438 * 10 9 7 26 26 H 1.09003 * 109.47301 * 298.27650 * 16 15 6 27 27 H 1.08995 * 109.47308 * 58.28455 * 16 15 6 28 28 H 1.08999 * 109.46464 * 178.28201 * 16 15 6 29 29 H 1.09002 * 109.47142 * 301.72083 * 17 15 6 30 30 H 1.09000 * 109.46991 * 181.71828 * 17 15 6 31 31 H 1.00896 * 111.00309 * 56.04370 * 18 17 15 32 32 H 1.00902 * 110.99923 * 180.02562 * 18 17 15 33 33 H 1.08996 * 110.71763 * 96.24664 * 19 15 6 34 34 H 1.08995 * 110.71757 * 219.52042 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3836 2.0104 0.5463 5 6 2.2697 1.7978 -1.4457 6 7 3.3612 2.7806 -1.3196 7 6 3.6230 3.7995 -2.1961 8 1 4.4499 4.4698 -2.0137 9 6 2.8256 3.9707 -3.3195 10 7 1.8177 3.1540 -3.5417 11 14 3.1831 5.3602 -4.5156 12 1 4.5516 5.1976 -5.0685 13 1 2.1941 5.3270 -5.6229 14 1 3.0872 6.6612 -3.8060 15 6 4.1217 2.4861 -0.0962 16 6 4.0881 3.6950 0.8411 17 6 5.5698 2.1449 -0.4532 18 7 6.1982 3.3005 -1.1072 19 6 3.4498 1.2751 0.5847 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.3763 2.2730 -1.8506 24 1 2.5788 0.9668 -2.0797 25 1 1.2603 3.2738 -4.3265 26 1 4.5592 4.5474 0.3516 27 1 3.0535 3.9399 1.0811 28 1 4.6277 3.4587 1.7581 29 1 5.5855 1.2911 -1.1306 30 1 6.1195 1.8982 0.4551 31 1 6.1387 4.1222 -0.5248 32 1 7.1560 3.1000 -1.3535 33 1 3.9567 0.3494 0.3126 34 1 3.4317 1.4024 1.6671 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708919385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = -33.346561 kcal Electronic energy + Delta-G solvation = -15601.653962 eV Core-core repulsion = 13148.750448 eV Total energy + Delta-G solvation = -2452.903514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33829 -38.06336 -35.11948 -33.91836 -30.92786 -30.64826 -27.48079 -27.04821 -26.15783 -24.27346 -21.90063 -20.22058 -18.52927 -17.59418 -16.96528 -16.46712 -15.93912 -15.62564 -15.41163 -15.28976 -14.56636 -14.09317 -13.82244 -13.54871 -13.47776 -13.08242 -12.69531 -12.61718 -12.52098 -12.22211 -12.03155 -11.89203 -11.56792 -11.42804 -11.23792 -10.56616 -10.33818 -9.17957 -8.71269 -7.55815 -4.96290 1.50861 1.54868 1.59773 2.60545 2.87599 3.52948 3.76293 3.91071 3.93620 4.15264 4.24652 4.32873 4.49448 4.53438 4.62526 4.70304 4.75526 4.86208 4.92837 4.94864 5.12330 5.18919 5.28284 5.43615 5.69936 5.87967 5.92054 6.35617 6.44412 6.56644 6.85229 7.31958 8.00378 8.61217 9.47635 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.013569 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.548285 B = 2063.091250 C = 2915.581054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.070 3.930 4 H 0.068 0.932 5 C 0.142 3.858 6 N -0.592 5.592 7 C -0.165 4.165 8 H 0.104 0.896 9 C -0.097 4.097 10 N -0.968 5.968 11 Si 0.971 3.029 12 H -0.287 1.287 13 H -0.307 1.307 14 H -0.279 1.279 15 C 0.168 3.832 16 C -0.142 4.142 17 C 0.073 3.927 18 N -0.845 5.845 19 C -0.108 4.108 20 H 0.027 0.973 21 H 0.105 0.895 22 H 0.055 0.945 23 H 0.072 0.928 24 H -0.025 1.025 25 H 0.235 0.765 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.341 0.659 32 H 0.339 0.661 33 H 0.070 0.930 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -2.255 11.063 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C 0.011 3.989 4 H 0.086 0.914 5 C 0.016 3.984 6 N -0.316 5.316 7 C -0.294 4.294 8 H 0.122 0.878 9 C -0.286 4.286 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.214 1.214 13 H -0.234 1.234 14 H -0.206 1.206 15 C 0.080 3.920 16 C -0.201 4.201 17 C -0.060 4.060 18 N -0.377 5.377 19 C -0.146 4.146 20 H 0.046 0.954 21 H 0.123 0.877 22 H 0.073 0.927 23 H 0.090 0.910 24 H -0.007 1.007 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.847 -2.423 10.322 10.978 hybrid contribution 0.349 0.666 -0.573 0.945 sum 3.196 -1.757 9.749 10.409 Atomic orbital electron populations 1.22891 0.80036 1.03626 1.00128 1.87772 1.21163 1.27849 1.95049 1.23520 0.94717 0.83677 0.96970 0.91420 1.22042 0.93849 0.90352 0.92179 1.44620 1.31257 1.31821 1.23881 1.19657 1.08101 1.02683 0.98987 0.87818 1.25526 0.99641 1.02232 1.01181 1.70056 1.21969 1.41217 1.29003 0.85213 0.76193 0.79756 0.78607 1.21357 1.23447 1.20556 1.20723 0.90938 0.93478 0.86843 1.22103 1.01208 0.98273 0.98508 1.22080 0.95164 0.92913 0.95831 1.58536 1.22251 1.06151 1.50726 1.22687 0.93571 0.97861 1.00459 0.95428 0.87707 0.92670 0.91037 1.00687 0.95551 0.93037 0.93923 0.90683 0.94320 0.94017 0.84440 0.84817 0.91141 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.89 113.37 1.23 2.12 16 2 O -0.40 -15.20 10.52 -148.98 -1.57 -16.77 16 3 C 0.07 2.80 3.49 32.07 0.11 2.92 16 4 H 0.07 2.60 7.90 -2.38 -0.02 2.58 16 5 C 0.14 7.35 5.63 86.86 0.49 7.84 16 6 N -0.59 -29.62 2.88 -645.47 -1.86 -31.48 16 7 C -0.16 -9.00 8.84 84.03 0.74 -8.25 16 8 H 0.10 5.38 6.28 -2.91 -0.02 5.36 16 9 C -0.10 -5.65 5.49 84.86 0.47 -5.18 16 10 N -0.97 -60.33 10.09 21.65 0.22 -60.12 16 11 Si 0.97 48.06 29.55 68.60 2.03 50.08 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 C 0.17 6.41 0.83 3.95 0.00 6.41 16 16 C -0.14 -4.61 8.07 71.98 0.58 -4.03 16 17 C 0.07 2.52 5.82 86.30 0.50 3.02 16 18 N -0.84 -28.57 7.26 -186.71 -1.36 -29.92 16 19 C -0.11 -3.71 5.78 31.87 0.18 -3.53 16 20 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 22 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16 23 H 0.07 4.22 5.87 -2.39 -0.01 4.20 16 24 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 25 H 0.23 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.05 1.74 6.31 -2.39 -0.02 1.72 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.34 10.44 6.96 -89.70 -0.62 9.81 16 32 H 0.34 9.61 9.08 -89.69 -0.81 8.80 16 33 H 0.07 2.45 7.85 -2.39 -0.02 2.43 16 34 H 0.10 2.74 7.83 -2.39 -0.02 2.72 16 Total: -1.00 -68.27 267.94 1.43 -66.83 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.35 Total: 20.06 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.31 Total: 1.31 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -2.99 Total: -121.52 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.57 Total: -16.77 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Total: -68.27 1.43 -66.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.486 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds