Wall clock time and date at job start Mon Mar 30 2020 02:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99716 * 2 1 4 4 H 1.08999 * 110.88721 * 333.88094 * 3 2 1 5 5 C 1.54908 * 111.03677 * 97.79158 * 3 2 1 6 6 N 1.47422 * 104.83357 * 155.09764 * 5 3 2 7 7 C 1.36934 * 125.65321 * 155.91756 * 6 5 3 8 8 H 1.07997 * 120.00156 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99339 * 359.94052 * 7 6 5 10 10 N 1.31619 * 120.00310 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99553 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47325 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47031 * 120.00517 * 11 9 7 14 14 H 1.48504 * 109.47085 * 240.00294 * 11 9 7 15 15 C 1.47031 * 108.70136 * 335.86884 * 6 5 3 16 16 C 1.52997 * 109.87989 * 120.47502 * 15 6 5 17 17 C 1.53003 * 109.88127 * 241.64370 * 15 6 5 18 18 N 1.46898 * 109.46917 * 302.80746 * 17 15 6 19 19 C 1.54327 * 107.26879 * 1.05978 * 15 6 5 20 20 H 1.09000 * 109.46839 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46572 * 299.99929 * 1 2 3 22 22 H 1.08993 * 109.47153 * 59.99608 * 1 2 3 23 23 H 1.09000 * 110.36459 * 273.93219 * 5 3 2 24 24 H 1.09001 * 110.36573 * 36.14562 * 5 3 2 25 25 H 0.97000 * 119.99728 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47804 * 302.19310 * 16 15 6 27 27 H 1.09006 * 109.46805 * 62.19442 * 16 15 6 28 28 H 1.09003 * 109.47205 * 182.18775 * 16 15 6 29 29 H 1.08996 * 109.47085 * 62.80987 * 17 15 6 30 30 H 1.08995 * 109.46863 * 182.80892 * 17 15 6 31 31 H 1.00901 * 111.00054 * 180.02562 * 18 17 15 32 32 H 1.00899 * 110.99984 * 303.95657 * 18 17 15 33 33 H 1.09001 * 110.71763 * 140.55775 * 19 15 6 34 34 H 1.08997 * 110.72099 * 263.64813 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0324 -0.4483 5 6 2.4154 1.7338 1.4325 6 7 3.4905 2.7241 1.2404 7 6 3.8426 3.7029 2.1311 8 1 4.6485 4.3822 1.8962 9 6 3.1629 3.8221 3.3356 10 7 2.1806 2.9942 3.6218 11 14 3.6427 5.1576 4.5503 12 1 4.7684 5.9509 3.9948 13 1 2.4799 6.0498 4.7900 14 1 4.0607 4.5343 5.8318 15 6 4.1229 2.4862 -0.0654 16 6 3.9936 3.7340 -0.9412 17 6 5.5990 2.1332 0.1279 18 7 6.2690 3.2147 0.8624 19 6 3.3823 1.3034 -0.7243 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.5684 2.1883 1.9464 24 1 2.7837 0.8759 1.9950 25 1 1.7060 3.0774 4.4636 26 1 2.9402 3.9890 -1.0573 27 1 4.5187 4.5648 -0.4698 28 1 4.4298 3.5373 -1.9206 29 1 5.6796 1.2053 0.6941 30 1 6.0729 2.0071 -0.8455 31 1 7.2460 3.0054 1.0026 32 1 6.1530 4.0986 0.3898 33 1 3.2545 1.4756 -1.7930 34 1 3.9138 0.3685 -0.5467 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708919386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:51 Heat of formation + Delta-G solvation = -9.677809 kcal Electronic energy + Delta-G solvation = -15602.735481 eV Core-core repulsion = 13150.858321 eV Total energy + Delta-G solvation = -2451.877160 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.69499 -36.53955 -33.33617 -32.14153 -29.19041 -28.93060 -26.04097 -25.42138 -24.42126 -22.51998 -20.17474 -18.50064 -16.71563 -16.00518 -15.13682 -14.95656 -14.20447 -14.09616 -13.81538 -13.70680 -12.83763 -12.54145 -12.21767 -11.86204 -11.79655 -11.45786 -11.16601 -10.75564 -10.67080 -10.63754 -10.40304 -10.12915 -9.73933 -9.65633 -9.51635 -8.67732 -8.45292 -7.70993 -6.68186 -5.41788 -2.81061 3.53062 3.58644 3.61328 4.29987 4.69464 5.25386 5.40712 5.48843 5.65344 5.67481 5.75533 5.81503 5.89647 6.00320 6.02216 6.06013 6.12086 6.23034 6.43825 6.45546 6.60456 6.72190 6.77299 7.13483 7.44676 7.84524 7.93073 7.98091 8.05362 8.15291 8.52270 9.46100 10.05358 10.66638 11.63560 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.013411 C = 0.009604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.822017 B = 2087.389369 C = 2914.856416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.386 6.386 3 C 0.057 3.943 4 H 0.060 0.940 5 C 0.138 3.862 6 N -0.575 5.575 7 C -0.173 4.173 8 H 0.095 0.905 9 C -0.030 4.030 10 N -0.936 5.936 11 Si 0.912 3.088 12 H -0.282 1.282 13 H -0.298 1.298 14 H -0.296 1.296 15 C 0.181 3.819 16 C -0.150 4.150 17 C 0.067 3.933 18 N -0.822 5.822 19 C -0.118 4.118 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.108 0.892 24 H 0.019 0.981 25 H 0.245 0.755 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.004 0.996 31 H 0.322 0.678 32 H 0.332 0.668 33 H 0.061 0.939 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -2.057 -9.278 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.305 6.305 3 C -0.001 4.001 4 H 0.078 0.922 5 C 0.013 3.987 6 N -0.298 5.298 7 C -0.301 4.301 8 H 0.112 0.888 9 C -0.223 4.223 10 N -0.588 5.588 11 Si 0.744 3.256 12 H -0.207 1.207 13 H -0.226 1.226 14 H -0.224 1.224 15 C 0.091 3.909 16 C -0.209 4.209 17 C -0.066 4.066 18 N -0.351 5.351 19 C -0.156 4.156 20 H 0.094 0.906 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.125 0.875 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.863 -2.309 -8.464 8.816 hybrid contribution 0.684 0.859 -0.127 1.106 sum 1.547 -1.450 -8.591 8.849 Atomic orbital electron populations 1.22666 0.82025 1.01603 0.99818 1.87802 1.18914 1.28604 1.95136 1.23766 0.93225 0.82983 1.00158 0.92174 1.22316 0.94465 0.91946 0.90012 1.44405 1.35842 1.34729 1.14850 1.19369 1.11355 1.04473 0.94930 0.88764 1.24762 0.99478 0.99779 0.98245 1.69794 1.25654 1.39482 1.23828 0.85998 0.77085 0.81088 0.81400 1.20719 1.22577 1.22385 1.20336 0.90830 0.91901 0.87827 1.22219 1.01500 0.99649 0.97540 1.22269 0.95828 0.94945 0.93601 1.58692 1.16403 1.04522 1.55511 1.22662 0.96037 0.98716 0.98212 0.90581 0.93722 0.94929 0.87487 0.96296 0.94385 0.92918 0.92561 0.94527 0.91831 0.97768 0.86682 0.85422 0.92027 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.85 101.05 1.10 1.65 16 2 O -0.39 -7.54 10.52 -35.23 -0.37 -7.91 16 3 C 0.06 1.17 3.54 -24.58 -0.09 1.08 16 4 H 0.06 1.19 7.83 -51.93 -0.41 0.79 16 5 C 0.14 3.47 5.62 -2.53 -0.01 3.46 16 6 N -0.57 -14.34 2.88 -155.37 -0.45 -14.79 16 7 C -0.17 -4.69 8.71 -15.06 -0.13 -4.82 16 8 H 0.09 2.48 6.07 -52.49 -0.32 2.16 16 9 C -0.03 -0.86 5.49 -17.43 -0.10 -0.96 16 10 N -0.94 -28.03 10.09 55.49 0.56 -27.47 16 11 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 15 C 0.18 3.64 0.83 -130.83 -0.11 3.53 16 16 C -0.15 -2.69 8.17 37.16 0.30 -2.39 16 17 C 0.07 1.23 5.85 -3.82 -0.02 1.21 16 18 N -0.82 -15.02 7.18 -10.37 -0.07 -15.09 16 19 C -0.12 -2.19 5.76 -24.90 -0.14 -2.33 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 23 H 0.11 3.01 5.87 -51.93 -0.31 2.71 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.03 6.43 -51.93 -0.33 0.70 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16 30 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.32 4.99 9.08 -39.29 -0.36 4.64 16 32 H 0.33 5.70 6.88 -39.29 -0.27 5.43 16 33 H 0.06 0.99 7.83 -51.93 -0.41 0.59 16 34 H 0.07 1.32 7.80 -51.93 -0.41 0.92 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -30.88 267.51 -5.84 -36.72 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.32 Total: 6.14 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.80 Total: 0.44 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.04 Total: -57.35 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.37 Total: -7.91 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.88 -5.84 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708919386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.041 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds