Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46295 * 114.00099 * 2 1 4 4 C 1.46848 * 111.00121 * 120.00222 * 3 2 1 5 5 C 1.53040 * 109.51692 * 185.83260 * 4 3 2 6 6 C 1.53120 * 109.27543 * 300.82418 * 5 4 3 7 7 N 1.46496 * 109.52159 * 177.55846 * 6 5 4 8 8 C 1.46507 * 120.00342 * 299.99918 * 7 6 5 9 9 C 1.36939 * 120.00167 * 119.99767 * 7 6 5 10 10 H 1.08001 * 119.99973 * 23.26837 * 9 7 6 11 11 C 1.38814 * 120.00112 * 203.26694 * 9 7 6 12 12 N 1.31613 * 119.99975 * 11.64995 * 11 9 7 13 13 Si 1.86802 * 119.99892 * 191.65496 * 11 9 7 14 14 H 1.48504 * 109.47113 * 59.99979 * 13 11 9 15 15 H 1.48495 * 109.46938 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46837 * 299.99909 * 13 11 9 17 17 C 1.53121 * 109.16284 * 57.65444 * 6 5 4 18 18 C 1.46833 * 110.98345 * 244.21135 * 3 2 1 19 19 H 1.09003 * 109.46960 * 300.00730 * 1 2 3 20 20 H 1.09002 * 109.47085 * 59.99942 * 1 2 3 21 21 H 1.08994 * 109.47608 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46166 * 65.81993 * 4 3 2 23 23 H 1.09000 * 109.46257 * 305.84344 * 4 3 2 24 24 H 1.09003 * 109.50048 * 60.76144 * 5 4 3 25 25 H 1.08990 * 109.50350 * 180.84646 * 5 4 3 26 26 H 1.08997 * 109.52408 * 297.74734 * 6 5 4 27 27 H 1.09001 * 109.47130 * 94.01934 * 8 7 6 28 28 H 1.08998 * 109.47266 * 214.02301 * 8 7 6 29 29 H 1.09000 * 109.46740 * 334.02502 * 8 7 6 30 30 H 0.97004 * 119.99652 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.50506 * 62.28286 * 17 6 5 32 32 H 1.09002 * 109.50422 * 182.36447 * 17 6 5 33 33 H 1.08996 * 109.46527 * 54.14269 * 18 3 2 34 34 H 1.09002 * 109.45521 * 294.16755 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8644 1.5384 1.1872 5 6 3.3510 2.9888 1.2285 6 6 4.1496 3.2904 -0.0426 7 7 4.5687 4.6941 -0.0360 8 6 3.5631 5.7586 0.0101 9 6 5.9003 5.0114 -0.0728 10 1 6.6126 4.3059 -0.4745 11 6 6.3346 6.2398 0.4060 12 7 5.5163 7.0025 1.0995 13 14 8.0805 6.8105 0.0660 14 1 8.2950 6.9009 -1.4007 15 1 8.2937 8.1451 0.6812 16 1 9.0410 5.8386 0.6477 17 6 3.2670 3.0257 -1.2655 18 6 2.7828 1.5742 -1.2344 19 1 -0.3633 0.5140 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 3.7230 0.8684 1.1427 23 1 2.2831 1.3247 2.0842 24 1 2.4932 3.6589 1.2869 25 1 3.9869 3.1346 2.1016 26 1 5.0287 2.6471 -0.0817 27 1 3.3978 6.0578 1.0452 28 1 3.9147 6.6157 -0.5641 29 1 2.6285 5.3942 -0.4164 30 1 5.8200 7.8607 1.4344 31 1 2.4079 3.6963 -1.2463 32 1 3.8432 3.1983 -2.1745 33 1 2.1425 1.3865 -2.0962 34 1 3.6418 0.9040 -1.2674 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709357895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = 24.090525 kcal Electronic energy + Delta-G solvation = -15073.724098 eV Core-core repulsion = 12623.311243 eV Total energy + Delta-G solvation = -2450.412855 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.46096 -36.19939 -34.30893 -31.41774 -30.45657 -28.91273 -26.05354 -25.88711 -23.46640 -22.59580 -21.03007 -18.69654 -16.99461 -16.70492 -15.21117 -15.12333 -14.88659 -13.92191 -13.79933 -13.58018 -13.11851 -13.08189 -12.38695 -12.15021 -12.00702 -11.58457 -11.10122 -10.90111 -10.73509 -10.66724 -10.33451 -10.21560 -10.12344 -9.80249 -9.69637 -9.54466 -8.51956 -8.45216 -6.70689 -5.69013 -3.15539 2.77923 3.40380 3.45700 3.46583 4.50799 4.95666 5.32617 5.34210 5.49765 5.52164 5.54589 5.62079 5.64528 5.72254 5.79748 5.83006 6.05778 6.19260 6.22569 6.31249 6.45418 6.63326 6.78633 6.93299 7.02504 7.15051 7.26120 7.44486 7.77849 7.84059 8.43951 9.27644 9.90909 10.40849 11.35659 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.066619 B = 0.006902 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.200399 B = 4055.612285 C = 4120.873328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.278 6.278 3 N -0.360 5.360 4 C 0.047 3.953 5 C -0.124 4.124 6 C 0.175 3.825 7 N -0.595 5.595 8 C 0.163 3.837 9 C -0.255 4.255 10 H 0.066 0.934 11 C 0.002 3.998 12 N -0.908 5.908 13 Si 0.905 3.095 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.284 1.284 17 C -0.127 4.127 18 C 0.047 3.953 19 H 0.042 0.958 20 H 0.041 0.959 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.041 0.959 29 H 0.000 1.000 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 -9.730 -2.218 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.281 6.281 3 N -0.130 5.130 4 C -0.081 4.081 5 C -0.165 4.165 6 C 0.066 3.934 7 N -0.317 5.317 8 C 0.019 3.981 9 C -0.385 4.385 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.553 5.553 13 Si 0.735 3.265 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.210 1.210 17 C -0.167 4.167 18 C -0.081 4.081 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.814 -9.397 -2.124 12.404 hybrid contribution 1.392 -0.068 -0.095 1.397 sum -6.422 -9.464 -2.219 11.650 Atomic orbital electron populations 1.22520 0.81284 1.00988 1.00424 1.90630 1.20329 1.20220 1.96891 1.67657 1.35179 1.06422 1.03769 1.22447 0.95132 0.98424 0.92129 1.22206 1.00559 0.92427 1.01265 1.20408 0.94476 0.87623 0.90899 1.43914 1.03121 0.98774 1.85861 1.20755 0.87892 0.90200 0.99284 1.19188 0.83665 1.01364 1.34288 0.91581 1.25026 0.97625 0.98827 0.98118 1.70058 1.34905 1.12336 1.38006 0.86339 0.84546 0.77770 0.77886 1.21114 1.21653 1.21000 1.22166 1.00616 0.92880 1.01015 1.22407 0.96214 0.98006 0.91509 0.93957 0.94046 0.90040 0.94202 0.90840 0.91432 0.90652 0.92163 0.95407 0.94026 0.98137 0.93746 0.91213 0.90882 0.90862 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 11.51 101.05 1.16 1.70 16 2 O -0.28 -4.32 10.96 -13.92 -0.15 -4.47 16 3 N -0.36 -5.86 4.99 -113.83 -0.57 -6.43 16 4 C 0.05 0.77 5.99 -3.83 -0.02 0.75 16 5 C -0.12 -2.33 5.41 -26.65 -0.14 -2.47 16 6 C 0.17 3.58 2.66 -67.81 -0.18 3.40 16 7 N -0.60 -14.85 2.82 -173.34 -0.49 -15.34 16 8 C 0.16 4.03 7.97 59.85 0.48 4.51 16 9 C -0.26 -7.02 9.59 -15.06 -0.14 -7.16 16 10 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 11 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 12 N -0.91 -26.52 10.66 55.49 0.59 -25.93 16 13 Si 0.90 21.88 29.57 -169.99 -5.03 16.86 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.13 -2.24 5.40 -26.65 -0.14 -2.38 16 18 C 0.05 0.75 5.99 -3.84 -0.02 0.72 16 19 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.31 7.60 -51.93 -0.39 0.92 16 25 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.06 1.27 7.87 -51.93 -0.41 0.86 16 27 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 28 H 0.04 1.11 7.25 -51.93 -0.38 0.73 16 29 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.07 1.27 6.57 -51.93 -0.34 0.93 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -29.63 272.44 -6.23 -35.87 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.59 Total: -3.69 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 0.89 Total: -0.96 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.47 Total: -47.70 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.15 Total: -4.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.63 -6.23 -35.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709357895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.958 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds