Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46295 * 114.00099 * 2 1 4 4 C 1.46848 * 111.00121 * 120.00222 * 3 2 1 5 5 C 1.53040 * 109.51692 * 185.83260 * 4 3 2 6 6 C 1.53120 * 109.27543 * 300.82418 * 5 4 3 7 7 N 1.46496 * 109.52159 * 177.55846 * 6 5 4 8 8 C 1.46507 * 120.00342 * 299.99918 * 7 6 5 9 9 C 1.36939 * 120.00167 * 119.99767 * 7 6 5 10 10 H 1.08001 * 119.99973 * 23.26837 * 9 7 6 11 11 C 1.38814 * 120.00112 * 203.26694 * 9 7 6 12 12 N 1.31613 * 119.99975 * 11.64995 * 11 9 7 13 13 Si 1.86802 * 119.99892 * 191.65496 * 11 9 7 14 14 H 1.48504 * 109.47113 * 59.99979 * 13 11 9 15 15 H 1.48495 * 109.46938 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46837 * 299.99909 * 13 11 9 17 17 C 1.53121 * 109.16284 * 57.65444 * 6 5 4 18 18 C 1.46833 * 110.98345 * 244.21135 * 3 2 1 19 19 H 1.09003 * 109.46960 * 300.00730 * 1 2 3 20 20 H 1.09002 * 109.47085 * 59.99942 * 1 2 3 21 21 H 1.08994 * 109.47608 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46166 * 65.81993 * 4 3 2 23 23 H 1.09000 * 109.46257 * 305.84344 * 4 3 2 24 24 H 1.09003 * 109.50048 * 60.76144 * 5 4 3 25 25 H 1.08990 * 109.50350 * 180.84646 * 5 4 3 26 26 H 1.08997 * 109.52408 * 297.74734 * 6 5 4 27 27 H 1.09001 * 109.47130 * 94.01934 * 8 7 6 28 28 H 1.08998 * 109.47266 * 214.02301 * 8 7 6 29 29 H 1.09000 * 109.46740 * 334.02502 * 8 7 6 30 30 H 0.97004 * 119.99652 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.50506 * 62.28286 * 17 6 5 32 32 H 1.09002 * 109.50422 * 182.36447 * 17 6 5 33 33 H 1.08996 * 109.46527 * 54.14269 * 18 3 2 34 34 H 1.09002 * 109.45521 * 294.16755 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8644 1.5384 1.1872 5 6 3.3510 2.9888 1.2285 6 6 4.1496 3.2904 -0.0426 7 7 4.5687 4.6941 -0.0360 8 6 3.5631 5.7586 0.0101 9 6 5.9003 5.0114 -0.0728 10 1 6.6126 4.3059 -0.4745 11 6 6.3346 6.2398 0.4060 12 7 5.5163 7.0025 1.0995 13 14 8.0805 6.8105 0.0660 14 1 8.2950 6.9009 -1.4007 15 1 8.2937 8.1451 0.6812 16 1 9.0410 5.8386 0.6477 17 6 3.2670 3.0257 -1.2655 18 6 2.7828 1.5742 -1.2344 19 1 -0.3633 0.5140 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 3.7230 0.8684 1.1427 23 1 2.2831 1.3247 2.0842 24 1 2.4932 3.6589 1.2869 25 1 3.9869 3.1346 2.1016 26 1 5.0287 2.6471 -0.0817 27 1 3.3978 6.0578 1.0452 28 1 3.9147 6.6157 -0.5641 29 1 2.6285 5.3942 -0.4164 30 1 5.8200 7.8607 1.4344 31 1 2.4079 3.6963 -1.2463 32 1 3.8432 3.1983 -2.1745 33 1 2.1425 1.3865 -2.0962 34 1 3.6418 0.9040 -1.2674 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709357895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = 5.124008 kcal Electronic energy + Delta-G solvation = -15074.546548 eV Core-core repulsion = 12623.311243 eV Total energy + Delta-G solvation = -2451.235305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91402 -37.62929 -35.93570 -33.27245 -31.84419 -30.55720 -28.01358 -27.06686 -25.18060 -23.98849 -22.66527 -20.26144 -18.74933 -18.22980 -17.02474 -16.37026 -16.14945 -15.74312 -15.20585 -15.07179 -14.58585 -14.52524 -14.06393 -13.78208 -13.39865 -13.09273 -12.78708 -12.71229 -12.43078 -12.28747 -12.14531 -12.04220 -11.73348 -11.58311 -11.21632 -10.89054 -10.59575 -9.71143 -8.74552 -7.80282 -5.29059 1.47681 1.49774 1.56315 1.60505 2.52053 3.32623 3.55788 3.77597 4.03424 4.11005 4.22790 4.39350 4.42831 4.63840 4.66563 4.66738 4.76078 4.83197 4.86208 4.89811 4.93829 5.01153 5.17387 5.27869 5.40782 5.50695 5.64972 5.74261 5.81412 6.10096 6.35592 7.17839 7.90083 8.34718 9.22619 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.066619 B = 0.006902 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.200399 B = 4055.612285 C = 4120.873328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.286 6.286 3 N -0.369 5.369 4 C 0.056 3.944 5 C -0.113 4.113 6 C 0.168 3.832 7 N -0.610 5.610 8 C 0.181 3.819 9 C -0.265 4.265 10 H 0.069 0.931 11 C -0.052 4.052 12 N -0.939 5.939 13 Si 0.969 3.031 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.276 1.276 17 C -0.114 4.114 18 C 0.054 3.946 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.110 0.890 22 H 0.041 0.959 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.001 0.999 28 H 0.014 0.986 29 H 0.030 0.970 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 -11.270 -2.920 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.291 6.291 3 N -0.139 5.139 4 C -0.072 4.072 5 C -0.153 4.153 6 C 0.061 3.939 7 N -0.332 5.332 8 C 0.036 3.964 9 C -0.395 4.395 10 H 0.087 0.913 11 C -0.247 4.247 12 N -0.586 5.586 13 Si 0.797 3.203 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.202 1.202 17 C -0.153 4.153 18 C -0.075 4.075 19 H 0.062 0.938 20 H 0.064 0.936 21 H 0.128 0.872 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.298 -10.973 -2.839 14.047 hybrid contribution 1.455 0.318 0.114 1.494 sum -6.843 -10.655 -2.726 12.953 Atomic orbital electron populations 1.22787 0.79299 1.02992 1.00742 1.90619 1.22451 1.19006 1.96986 1.67604 1.35026 1.07692 1.03547 1.22276 0.95533 0.96299 0.93127 1.21965 0.99556 0.94257 0.99490 1.20612 0.95099 0.85109 0.93061 1.44128 1.02496 1.00579 1.86044 1.20453 0.88959 0.89606 0.97350 1.19537 0.84965 1.01492 1.33529 0.91310 1.25783 1.01374 0.99136 0.98406 1.70228 1.36587 1.12430 1.39318 0.85324 0.80259 0.76948 0.77788 1.20458 1.22100 1.20211 1.21955 0.99652 0.94430 0.99289 1.22320 0.96701 0.96263 0.92201 0.93795 0.93558 0.87163 0.94075 0.89438 0.92265 0.92376 0.92874 0.98045 0.96735 0.95190 0.94326 0.91642 0.90864 0.88888 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 11.51 113.37 1.30 2.09 16 2 O -0.29 -8.04 10.96 -50.15 -0.55 -8.59 16 3 N -0.37 -11.11 4.99 -514.04 -2.57 -13.67 16 4 C 0.06 1.74 5.99 86.33 0.52 2.26 16 5 C -0.11 -4.15 5.41 30.65 0.17 -3.99 16 6 C 0.17 6.81 2.66 45.07 0.12 6.93 16 7 N -0.61 -30.61 2.82 -702.32 -1.98 -32.59 16 8 C 0.18 9.07 7.97 127.77 1.02 10.08 16 9 C -0.27 -14.63 9.59 84.03 0.81 -13.82 16 10 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 11 C -0.05 -2.93 5.12 84.86 0.43 -2.49 16 12 N -0.94 -55.99 10.66 21.65 0.23 -55.76 16 13 Si 0.97 45.26 29.57 68.60 2.03 47.28 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 C -0.11 -3.83 5.40 30.65 0.17 -3.66 16 18 C 0.05 1.56 5.99 86.33 0.52 2.07 16 19 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 20 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 21 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.06 2.27 7.60 -2.39 -0.02 2.25 16 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.05 2.21 7.87 -2.39 -0.02 2.19 16 27 H 0.00 0.07 7.41 -2.39 -0.02 0.05 16 28 H 0.01 0.77 7.25 -2.39 -0.02 0.75 16 29 H 0.03 1.29 6.38 -2.39 -0.02 1.27 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.06 2.27 6.57 -2.39 -0.02 2.25 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -62.63 272.44 3.26 -59.37 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.05 Total: 4.49 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.05 Total: -0.54 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -4.32 Total: -102.03 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.55 Total: -8.59 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -62.63 3.26 -59.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709357895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.497 kcal (2) G-P(sol) polarization free energy of solvation -62.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds