Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47716 * 2 1 4 4 C 1.53008 * 109.47264 * 240.00002 * 2 1 3 5 5 C 1.50697 * 109.47425 * 175.00054 * 4 2 1 6 6 H 1.08002 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00078 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00266 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47054 * 59.99991 * 9 7 5 11 11 H 1.48500 * 109.47433 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47182 * 300.00286 * 9 7 5 13 13 O 1.42908 * 109.47479 * 120.00214 * 2 1 3 14 14 C 1.42905 * 113.99678 * 269.99980 * 13 2 1 15 15 C 1.52995 * 109.46699 * 179.97438 * 14 13 2 16 16 H 1.09007 * 110.35208 * 52.86073 * 15 14 13 17 17 C 1.54947 * 110.30771 * 174.99727 * 15 14 13 18 18 C 1.55306 * 100.97824 * 155.34129 * 17 15 14 19 19 C 1.54429 * 102.23000 * 325.92130 * 18 17 15 20 20 O 1.43234 * 107.60919 * 21.29662 * 19 18 17 21 21 H 1.09004 * 109.47274 * 59.99606 * 1 2 3 22 22 H 1.09005 * 109.47388 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47163 * 300.00052 * 1 2 3 24 24 H 1.09005 * 109.46462 * 295.00246 * 4 2 1 25 25 H 1.08996 * 109.46615 * 54.99973 * 4 2 1 26 26 H 0.97000 * 120.00757 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.46649 * 59.99687 * 14 13 2 28 28 H 1.08992 * 109.46610 * 299.99577 * 14 13 2 29 29 H 1.09002 * 111.12777 * 273.28398 * 17 15 14 30 30 H 1.08995 * 111.12300 * 37.40291 * 17 15 14 31 31 H 1.09001 * 110.84858 * 84.08537 * 18 17 15 32 32 H 1.09006 * 110.84549 * 207.69503 * 18 17 15 33 33 H 1.09007 * 109.79290 * 261.79697 * 19 18 17 34 34 H 1.08999 * 109.92783 * 140.87682 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1936 -2.3578 8 7 3.5763 -1.8379 -3.2995 9 14 6.0921 -1.0624 -2.4362 10 1 6.6837 -1.6884 -1.2265 11 1 6.5870 -1.7624 -3.6487 12 1 6.4854 0.3683 -2.4958 13 8 2.0063 -0.6737 1.1668 14 6 2.2001 0.1829 2.2941 15 6 2.7080 -0.6408 3.4791 16 1 3.5857 -1.2192 3.1904 17 6 3.0443 0.2866 4.6740 18 6 2.8916 -0.6984 5.8650 19 6 1.7425 -1.6131 5.3878 20 8 1.6728 -1.5125 3.9607 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7515 -1.7716 -1.2056 25 1 1.6053 -0.2617 -2.1369 26 1 4.0607 -2.2453 -4.0346 27 1 1.2538 0.6546 2.5588 28 1 2.9319 0.9512 2.0449 29 1 4.0648 0.6632 4.6039 30 1 2.3299 1.1064 4.7481 31 1 3.8067 -1.2714 6.0143 32 1 2.6129 -0.1666 6.7748 33 1 0.8013 -1.2836 5.8281 34 1 1.9445 -2.6446 5.6764 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009208.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -132.634658 kcal Electronic energy + Delta-G solvation = -14637.982994 eV Core-core repulsion = 12148.481274 eV Total energy + Delta-G solvation = -2489.501720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47383 -38.90418 -35.30245 -33.41112 -32.99625 -31.05951 -29.29286 -26.34304 -25.06657 -22.59462 -22.23833 -21.69180 -18.52166 -18.10035 -17.34072 -16.97829 -16.54232 -16.09239 -15.49838 -14.96435 -14.61660 -14.10596 -13.84188 -13.57064 -13.44154 -13.21948 -12.88159 -12.63231 -12.59224 -12.50186 -12.24339 -12.12174 -11.84092 -11.64085 -11.28956 -11.18349 -10.56144 -10.44323 -10.22702 -8.17313 -6.26580 1.38656 1.43015 1.50539 2.42448 2.80628 2.95481 3.17121 3.57809 3.95077 3.99473 4.16523 4.17073 4.34724 4.40989 4.45848 4.52808 4.57749 4.65728 4.81976 4.84893 4.89849 4.99658 5.03563 5.17854 5.24298 5.26540 5.43635 5.52630 5.80820 6.14764 6.24654 6.63345 6.85928 7.40211 8.94878 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.007396 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.667712 B = 3785.102940 C = 4355.757943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 H 0.055 0.945 4 C 0.025 3.975 5 C -0.527 4.527 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.263 1.263 13 O -0.395 6.395 14 C 0.058 3.942 15 C 0.077 3.923 16 H 0.058 0.942 17 C -0.141 4.141 18 C -0.145 4.145 19 C 0.035 3.965 20 O -0.406 6.406 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.067 0.933 24 H -0.012 1.012 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 6.022 17.743 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.073 0.927 4 C -0.012 4.012 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.789 3.211 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.187 1.187 13 O -0.314 6.314 14 C -0.018 4.018 15 C 0.020 3.980 16 H 0.076 0.924 17 C -0.178 4.178 18 C -0.182 4.182 19 C -0.041 4.041 20 O -0.327 6.327 21 H 0.090 0.910 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.007 0.993 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.598 5.630 17.467 18.421 hybrid contribution 0.807 -0.078 -0.469 0.937 sum -0.791 5.552 16.998 17.899 Atomic orbital electron populations 1.22204 0.95528 1.01838 1.02303 1.22160 0.93132 0.95257 0.85581 0.92683 1.19133 0.95675 0.94623 0.91743 1.21475 0.93209 1.34147 1.07659 0.92574 1.25969 1.03869 0.94915 0.95310 1.70089 1.37700 1.37033 1.12871 0.85510 0.79229 0.78844 0.77519 1.19652 1.20704 1.18734 1.88010 1.87027 1.36026 1.20373 1.22785 1.00133 0.92864 0.86054 1.23078 0.90088 0.91044 0.93786 0.92394 1.23246 1.04292 0.98162 0.92112 1.23120 0.98875 0.97071 0.99173 1.23389 0.99924 1.00439 0.80322 1.88508 1.53790 1.68275 1.22086 0.91027 0.93520 0.91408 0.99347 0.96778 0.92822 0.92363 0.91647 0.88091 0.88970 0.89908 0.87250 0.90275 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 9.53 71.98 0.69 -5.30 16 2 C 0.10 4.32 2.67 30.59 0.08 4.40 16 3 H 0.06 2.32 7.79 -2.39 -0.02 2.30 16 4 C 0.03 1.42 4.68 29.85 0.14 1.56 16 5 C -0.53 -31.44 8.88 25.60 0.23 -31.21 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 8 N -0.94 -59.00 13.29 21.44 0.28 -58.72 16 9 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 13 O -0.39 -18.10 9.74 -148.82 -1.45 -19.55 16 14 C 0.06 2.00 5.45 71.98 0.39 2.39 16 15 C 0.08 2.37 3.73 31.26 0.12 2.49 16 16 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 17 C -0.14 -2.74 6.57 32.05 0.21 -2.53 16 18 C -0.15 -2.35 7.02 31.87 0.22 -2.13 16 19 C 0.04 0.78 7.79 72.47 0.56 1.35 16 20 O -0.41 -13.53 11.04 -148.82 -1.64 -15.17 16 21 H 0.07 2.43 8.14 -2.38 -0.02 2.42 16 22 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.07 2.13 7.87 -2.39 -0.02 2.11 16 24 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 25 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.06 1.79 7.87 -2.39 -0.02 1.77 16 28 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.01 283.85 3.36 -68.65 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.04 Total: 5.74 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 3.10 Total: -28.75 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.28 Total: -58.72 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -3.09 Total: -34.72 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.01 3.36 -68.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009208.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.988 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds