Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 C 1.52998 * 109.47247 * 120.00287 * 2 1 3 5 5 C 1.50695 * 109.47191 * 185.00119 * 4 2 1 6 6 H 1.08000 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99683 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99492 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00544 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47102 * 89.99397 * 9 7 5 11 11 H 1.48490 * 109.47316 * 210.00219 * 9 7 5 12 12 H 1.48501 * 109.46693 * 329.99922 * 9 7 5 13 13 O 1.42899 * 109.47031 * 240.00087 * 2 1 3 14 14 C 1.42905 * 113.99778 * 90.00250 * 13 2 1 15 15 C 1.53002 * 109.47079 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.86998 * 53.99146 * 15 14 13 17 17 C 1.54095 * 109.87685 * 174.99706 * 15 14 13 18 18 C 1.54816 * 104.18565 * 121.45263 * 17 15 14 19 19 C 1.55001 * 102.09138 * 20.87827 * 18 17 15 20 20 O 1.43745 * 109.87455 * 292.82742 * 15 14 13 21 21 H 1.09003 * 109.47460 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47645 * 299.99476 * 1 2 3 23 23 H 1.09006 * 109.47358 * 59.99871 * 1 2 3 24 24 H 1.09005 * 109.46877 * 305.00281 * 4 2 1 25 25 H 1.09003 * 109.47228 * 64.99599 * 4 2 1 26 26 H 0.97004 * 119.99458 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47054 * 299.99711 * 14 13 2 28 28 H 1.09000 * 109.47187 * 59.99767 * 14 13 2 29 29 H 1.09001 * 110.48947 * 240.12766 * 17 15 14 30 30 H 1.08992 * 110.49265 * 2.64847 * 17 15 14 31 31 H 1.08999 * 110.90594 * 139.07697 * 18 17 15 32 32 H 1.08996 * 110.91164 * 262.68482 * 18 17 15 33 33 H 1.09001 * 110.61218 * 81.47720 * 19 18 17 34 34 H 1.09000 * 110.61447 * 204.47100 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2302 -1.1927 2.3583 8 7 5.5409 -1.0994 2.4139 9 14 3.3014 -2.1080 3.6958 10 1 3.1708 -3.5380 3.3178 11 1 4.0446 -2.0003 4.9769 12 1 1.9503 -1.5129 3.8559 13 8 2.0063 -0.6736 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 2.7078 -0.6406 -3.4793 16 1 2.0329 -1.4759 -3.6662 17 6 2.8008 0.2490 -4.7340 18 6 4.2887 0.1605 -5.1524 19 6 4.7438 -1.1487 -4.4586 20 8 4.0310 -1.1298 -3.2032 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6053 -0.2618 2.1369 25 1 1.7516 -1.7716 1.2055 26 1 6.0253 -1.5063 3.1494 27 1 1.2537 0.6548 -2.5588 28 1 2.9319 0.9514 -2.0449 29 1 2.1584 -0.1385 -5.5249 30 1 2.5306 1.2771 -4.4937 31 1 4.3841 0.0803 -6.2353 32 1 4.8502 1.0156 -4.7761 33 1 4.4555 -2.0171 -5.0508 34 1 5.8205 -1.1388 -4.2889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710009210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -104.804857 kcal Electronic energy + Delta-G solvation = -14758.008959 eV Core-core repulsion = 12269.714030 eV Total energy + Delta-G solvation = -2488.294929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.27773 -37.33565 -33.18151 -32.02377 -31.55624 -29.76879 -27.80818 -25.01822 -22.72171 -21.87218 -20.87258 -19.86516 -16.65453 -16.55053 -15.94251 -15.47353 -15.37415 -14.31897 -13.88884 -13.52695 -13.34000 -12.69181 -12.37731 -12.08393 -11.90023 -11.63956 -11.62330 -11.44670 -11.09311 -10.96991 -10.65087 -10.56195 -10.20649 -9.71228 -9.60635 -9.34362 -9.06123 -8.63562 -8.39103 -5.88142 -3.83530 3.40884 3.46809 3.49531 4.05775 4.31417 4.57785 4.61272 4.89426 5.04065 5.30333 5.38686 5.48181 5.56798 5.63250 5.69103 5.72846 5.78671 5.84749 5.89227 5.97098 6.04817 6.10610 6.24676 6.32212 6.64023 6.79554 7.19147 7.25922 7.33976 7.90587 8.16917 8.71153 9.19861 9.73580 11.25905 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.008144 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.266203 B = 3437.444568 C = 4090.299055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.051 0.949 4 C -0.013 4.013 5 C -0.502 4.502 6 H 0.073 0.927 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.359 6.359 14 C 0.065 3.935 15 C 0.080 3.920 16 H 0.071 0.929 17 C -0.150 4.150 18 C -0.155 4.155 19 C 0.041 3.959 20 O -0.349 6.349 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.020 0.980 26 H 0.260 0.740 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 3.069 -13.790 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.041 3.959 3 H 0.070 0.930 4 C -0.050 4.050 5 C -0.541 4.541 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 O -0.278 6.278 14 C -0.013 4.013 15 C 0.022 3.978 16 H 0.089 0.911 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.036 4.036 20 O -0.267 6.267 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.799 2.757 -13.466 15.335 hybrid contribution -0.505 -0.186 0.495 0.732 sum -7.304 2.571 -12.971 15.106 Atomic orbital electron populations 1.22373 0.98190 1.01897 1.00724 1.22116 0.90640 0.96260 0.86855 0.93039 1.19719 0.97946 0.96038 0.91280 1.21048 0.89529 1.34566 1.08914 0.90839 1.25004 0.94726 0.96042 0.97891 1.69929 1.06454 1.45911 1.32264 0.86815 0.80304 0.80769 0.81574 1.20357 1.21544 1.19207 1.88044 1.86578 1.33874 1.19294 1.22582 0.98100 0.93209 0.87383 1.22724 0.86243 0.95794 0.93063 0.91108 1.22937 0.97263 1.01177 0.97357 1.23139 0.95831 0.99460 1.00837 1.23554 0.98072 0.96029 0.85945 1.89178 1.23566 1.86058 1.27928 0.92379 0.92170 0.93825 0.95435 0.96175 0.93005 0.93483 0.92948 0.90599 0.90370 0.90507 0.90406 0.92582 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.53 37.16 0.35 -2.62 16 2 C 0.10 2.13 2.67 -26.73 -0.07 2.06 16 3 H 0.05 1.09 7.79 -51.93 -0.40 0.69 16 4 C -0.01 -0.32 3.75 -27.89 -0.10 -0.43 16 5 C -0.50 -15.25 9.43 -34.44 -0.32 -15.58 16 6 H 0.07 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.91 -29.30 13.96 55.43 0.77 -28.52 16 9 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 13 O -0.36 -8.04 9.73 -36.85 -0.36 -8.40 16 14 C 0.06 1.15 5.20 37.16 0.19 1.34 16 15 C 0.08 1.27 3.71 -26.16 -0.10 1.18 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.15 -1.70 6.64 -25.20 -0.17 -1.87 16 18 C -0.15 -1.70 7.15 -24.72 -0.18 -1.88 16 19 C 0.04 0.56 7.72 38.21 0.29 0.85 16 20 O -0.35 -6.72 11.18 -36.85 -0.41 -7.13 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 24 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 27 H 0.05 0.69 7.87 -51.93 -0.41 0.28 16 28 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 279.87 15.07 4.22 4.22 Total: -1.00 -34.50 279.87 -6.42 -40.92 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.78 Total: -4.05 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.20 Total: -15.10 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.77 Total: -28.52 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.77 Total: -15.52 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.50 -6.42 -40.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.885 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds