Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 C 1.52998 * 109.47247 * 120.00287 * 2 1 3 5 5 C 1.50695 * 109.47191 * 185.00119 * 4 2 1 6 6 H 1.08000 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99683 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99492 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00544 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47102 * 89.99397 * 9 7 5 11 11 H 1.48490 * 109.47316 * 210.00219 * 9 7 5 12 12 H 1.48501 * 109.46693 * 329.99922 * 9 7 5 13 13 O 1.42899 * 109.47031 * 240.00087 * 2 1 3 14 14 C 1.42905 * 113.99778 * 90.00250 * 13 2 1 15 15 C 1.53002 * 109.47079 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.86998 * 53.99146 * 15 14 13 17 17 C 1.54095 * 109.87685 * 174.99706 * 15 14 13 18 18 C 1.54816 * 104.18565 * 121.45263 * 17 15 14 19 19 C 1.55001 * 102.09138 * 20.87827 * 18 17 15 20 20 O 1.43745 * 109.87455 * 292.82742 * 15 14 13 21 21 H 1.09003 * 109.47460 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47645 * 299.99476 * 1 2 3 23 23 H 1.09006 * 109.47358 * 59.99871 * 1 2 3 24 24 H 1.09005 * 109.46877 * 305.00281 * 4 2 1 25 25 H 1.09003 * 109.47228 * 64.99599 * 4 2 1 26 26 H 0.97004 * 119.99458 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47054 * 299.99711 * 14 13 2 28 28 H 1.09000 * 109.47187 * 59.99767 * 14 13 2 29 29 H 1.09001 * 110.48947 * 240.12766 * 17 15 14 30 30 H 1.08992 * 110.49265 * 2.64847 * 17 15 14 31 31 H 1.08999 * 110.90594 * 139.07697 * 18 17 15 32 32 H 1.08996 * 110.91164 * 262.68482 * 18 17 15 33 33 H 1.09001 * 110.61218 * 81.47720 * 19 18 17 34 34 H 1.09000 * 110.61447 * 204.47100 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2302 -1.1927 2.3583 8 7 5.5409 -1.0994 2.4139 9 14 3.3014 -2.1080 3.6958 10 1 3.1708 -3.5380 3.3178 11 1 4.0446 -2.0003 4.9769 12 1 1.9503 -1.5129 3.8559 13 8 2.0063 -0.6736 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 2.7078 -0.6406 -3.4793 16 1 2.0329 -1.4759 -3.6662 17 6 2.8008 0.2490 -4.7340 18 6 4.2887 0.1605 -5.1524 19 6 4.7438 -1.1487 -4.4586 20 8 4.0310 -1.1298 -3.2032 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6053 -0.2618 2.1369 25 1 1.7516 -1.7716 1.2055 26 1 6.0253 -1.5063 3.1494 27 1 1.2537 0.6548 -2.5588 28 1 2.9319 0.9514 -2.0449 29 1 2.1584 -0.1385 -5.5249 30 1 2.5306 1.2771 -4.4937 31 1 4.3841 0.0803 -6.2353 32 1 4.8502 1.0156 -4.7761 33 1 4.4555 -2.0171 -5.0508 34 1 5.8205 -1.1388 -4.2889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -129.531673 kcal Electronic energy + Delta-G solvation = -14759.081194 eV Core-core repulsion = 12269.714030 eV Total energy + Delta-G solvation = -2489.367165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49083 -38.92188 -35.24757 -33.56252 -33.02648 -31.08735 -29.69221 -26.27157 -24.69139 -22.96886 -22.15384 -21.52214 -18.90768 -17.95512 -17.22857 -16.89843 -16.61966 -16.31687 -15.39770 -14.97876 -14.51772 -14.46538 -14.09177 -13.72102 -13.55438 -13.24334 -12.80653 -12.59207 -12.50557 -12.37802 -12.08676 -11.90780 -11.76605 -11.57519 -11.44093 -11.25687 -10.74567 -10.60616 -10.25650 -8.25204 -6.27721 1.34875 1.38249 1.49360 2.38098 2.81921 3.01870 3.12289 3.63619 3.90292 3.98124 4.11279 4.19756 4.31030 4.36585 4.45355 4.49337 4.56045 4.65320 4.80023 4.88630 4.89086 4.96101 5.06151 5.07521 5.17060 5.19941 5.29494 5.41303 5.68145 6.07900 6.30655 6.59135 6.78606 7.33612 8.92751 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.008144 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.266203 B = 3437.444568 C = 4090.299055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 H 0.043 0.957 4 C -0.013 4.013 5 C -0.516 4.516 6 H 0.021 0.979 7 C -0.004 4.004 8 N -0.956 5.956 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.239 1.239 13 O -0.395 6.395 14 C 0.059 3.941 15 C 0.071 3.929 16 H 0.072 0.928 17 C -0.139 4.139 18 C -0.147 4.147 19 C 0.029 3.971 20 O -0.408 6.408 21 H 0.059 0.941 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.017 0.983 26 H 0.264 0.736 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 3.075 -14.457 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.061 0.939 4 C -0.050 4.050 5 C -0.554 4.554 6 H 0.039 0.961 7 C -0.199 4.199 8 N -0.597 5.597 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.163 1.163 13 O -0.315 6.315 14 C -0.017 4.017 15 C 0.014 3.986 16 H 0.090 0.910 17 C -0.176 4.176 18 C -0.184 4.184 19 C -0.047 4.047 20 O -0.328 6.328 21 H 0.078 0.922 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.388 2.783 -14.158 17.214 hybrid contribution 0.413 -0.159 0.615 0.758 sum -8.975 2.625 -13.543 16.458 Atomic orbital electron populations 1.22234 0.93923 1.02729 1.02986 1.22072 0.93826 0.94885 0.85410 0.93872 1.19708 0.94464 0.96545 0.94289 1.21322 0.92388 1.34034 1.07637 0.96089 1.26095 0.95727 0.97100 1.01007 1.70106 1.08661 1.47359 1.33616 0.85584 0.79881 0.79069 0.77615 1.19774 1.20635 1.16260 1.87976 1.87158 1.35741 1.20576 1.22867 0.99419 0.92777 0.86657 1.22960 0.84963 0.96583 0.94126 0.90962 1.22943 0.98024 1.00921 0.95760 1.23131 0.95321 0.97426 1.02569 1.23832 0.97671 0.98492 0.84729 1.89114 1.25538 1.86720 1.31425 0.92217 0.90456 0.91057 0.93868 0.96463 0.92693 0.89665 0.95207 0.87522 0.89267 0.87000 0.91115 0.90794 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.53 71.98 0.69 -4.34 16 2 C 0.10 4.08 2.67 30.59 0.08 4.16 16 3 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 4 C -0.01 -0.65 3.75 29.85 0.11 -0.54 16 5 C -0.52 -32.50 9.43 25.60 0.24 -32.26 16 6 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 7 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 8 N -0.96 -64.07 13.96 21.45 0.30 -63.77 16 9 Si 0.96 46.94 27.47 68.60 1.88 48.82 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 13 O -0.39 -17.94 9.73 -147.43 -1.43 -19.37 16 14 C 0.06 2.11 5.20 71.98 0.37 2.48 16 15 C 0.07 2.25 3.71 30.97 0.11 2.36 16 16 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.14 -2.83 6.64 31.58 0.21 -2.62 16 18 C -0.15 -2.96 7.15 31.90 0.23 -2.73 16 19 C 0.03 0.79 7.72 72.67 0.56 1.35 16 20 O -0.41 -16.36 11.18 -147.43 -1.65 -18.01 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.07 1.82 7.87 -2.38 -0.02 1.80 16 24 H 0.04 2.04 7.20 -2.38 -0.02 2.03 16 25 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 26 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 27 H 0.09 2.30 7.87 -2.38 -0.02 2.29 16 28 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.63 7.70 -2.39 -0.02 1.61 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -79.06 279.87 3.16 -75.90 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.99 Total: 8.34 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.07 Total: -31.91 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.30 Total: -63.77 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -3.08 Total: -37.38 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.88 Total: 48.82 kcal Total: -79.06 3.16 -75.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.628 kcal (2) G-P(sol) polarization free energy of solvation -79.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds