Wall clock time and date at job start Mon Mar 30 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.48125 * 2 1 4 4 C 1.53098 * 109.48064 * 239.96134 * 2 1 3 5 5 C 1.53178 * 109.16541 * 297.62775 * 4 2 1 6 6 H 1.08998 * 109.53873 * 183.15019 * 5 4 2 7 7 O 1.42903 * 109.54194 * 62.97293 * 5 4 2 8 8 C 1.53178 * 109.03350 * 303.02063 * 5 4 2 9 9 H 1.09003 * 109.51924 * 297.06866 * 8 5 4 10 10 C 1.53002 * 109.52101 * 176.95057 * 8 5 4 11 11 C 1.50697 * 109.47176 * 63.37010 * 10 8 5 12 12 H 1.08010 * 120.00093 * 4.96528 * 11 10 8 13 13 C 1.37875 * 120.00385 * 184.95985 * 11 10 8 14 14 N 1.31521 * 119.99532 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00523 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46692 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47081 * 119.99991 * 15 13 11 18 18 H 1.48503 * 109.46911 * 240.00314 * 15 13 11 19 19 C 1.53090 * 109.16528 * 56.97803 * 8 5 4 20 20 H 1.08999 * 109.47822 * 62.37809 * 19 8 5 21 21 C 1.52998 * 109.47983 * 182.40698 * 19 8 5 22 22 O 1.42901 * 109.41945 * 302.38953 * 19 8 5 23 23 H 1.09003 * 109.47271 * 309.56057 * 1 2 3 24 24 H 1.08996 * 109.47498 * 69.56302 * 1 2 3 25 25 H 1.09005 * 109.47428 * 189.55854 * 1 2 3 26 26 H 1.09003 * 109.51584 * 57.53409 * 4 2 1 27 27 H 1.08998 * 109.51896 * 177.71898 * 4 2 1 28 28 H 0.96700 * 113.99631 * 60.00240 * 7 5 4 29 29 H 1.08998 * 109.47279 * 183.37164 * 10 8 5 30 30 H 1.09000 * 109.46983 * 303.37318 * 10 8 5 31 31 H 0.96995 * 119.99835 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.47522 * 173.83042 * 21 19 8 33 33 H 1.09000 * 109.47446 * 293.82993 * 21 19 8 34 34 H 1.09005 * 109.46929 * 53.82738 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7225 -1.2495 5 6 1.5757 -2.1816 -1.2119 6 1 1.9825 -2.7160 -2.0704 7 8 0.1480 -2.2296 -1.2515 8 6 2.0764 -2.8322 0.0813 9 1 3.1664 -2.8401 0.0867 10 6 1.5544 -4.2679 0.1666 11 6 2.1208 -5.0768 -0.9718 12 1 2.8481 -4.6364 -1.6378 13 6 1.7105 -6.3791 -1.1632 14 7 0.8245 -6.9153 -0.3525 15 14 2.4130 -7.3821 -2.5739 16 1 3.3838 -6.5545 -3.3341 17 1 3.1009 -8.5820 -2.0336 18 1 1.3122 -7.8065 -3.4757 19 6 1.5645 -2.0283 1.2793 20 1 0.4750 -2.0549 1.2961 21 6 2.1098 -2.6369 2.5727 22 8 2.0065 -0.6740 1.1665 23 1 -0.3634 0.6545 0.7923 24 1 -0.3634 0.3588 -0.9629 25 1 -0.3634 -1.0134 0.1707 26 1 1.6420 -0.2360 -2.1398 27 1 3.1297 -0.6876 -1.2708 28 1 -0.2372 -1.8284 -2.0426 29 1 1.8611 -4.7103 1.1144 30 1 0.4663 -4.2633 0.1029 31 1 0.5355 -7.8313 -0.4873 32 1 1.8367 -2.0028 3.4162 33 1 1.6859 -3.6312 2.7135 34 1 3.1956 -2.7105 2.5101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710021296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:03 Heat of formation + Delta-G solvation = -134.074131 kcal Electronic energy + Delta-G solvation = -15632.950093 eV Core-core repulsion = 13143.385953 eV Total energy + Delta-G solvation = -2489.564140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19747 -37.27080 -35.94911 -34.17978 -33.02627 -30.43094 -29.60893 -27.04435 -24.81858 -23.21251 -22.23159 -20.36609 -18.54962 -17.63657 -17.38566 -16.80011 -16.32547 -16.00302 -15.13858 -14.69311 -14.39958 -14.14042 -13.87236 -13.54862 -13.39482 -12.92811 -12.88139 -12.69855 -12.54714 -12.44922 -12.31578 -11.93112 -11.83607 -11.35587 -11.17626 -10.94419 -10.49514 -10.38295 -9.94952 -8.14998 -6.23505 1.38742 1.39206 1.51381 2.41869 2.91722 3.18356 3.55289 3.87858 3.96289 4.03845 4.12024 4.30795 4.42423 4.57954 4.60970 4.72607 4.81806 4.86867 4.94379 5.07130 5.11484 5.17967 5.26920 5.30869 5.32879 5.56873 5.66756 5.78530 5.93511 6.28554 6.44725 6.90947 7.08708 7.43373 8.97039 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040469 B = 0.009577 C = 0.008710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.713904 B = 2922.982790 C = 3213.979218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.115 0.885 4 C -0.174 4.174 5 C 0.119 3.881 6 H 0.044 0.956 7 O -0.563 6.563 8 C -0.096 4.096 9 H 0.063 0.937 10 C 0.043 3.957 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.958 3.042 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.097 3.903 20 H 0.053 0.947 21 C -0.140 4.140 22 O -0.393 6.393 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.380 0.620 29 H -0.007 1.007 30 H -0.002 1.002 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 13.247 -1.639 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.028 3.972 3 H 0.133 0.867 4 C -0.212 4.212 5 C 0.061 3.939 6 H 0.062 0.938 7 O -0.370 6.370 8 C -0.115 4.115 9 H 0.081 0.919 10 C 0.006 3.994 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.783 3.217 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.207 1.207 19 C 0.040 3.960 20 H 0.071 0.929 21 C -0.197 4.197 22 O -0.313 6.313 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.229 0.771 29 H 0.011 0.989 30 H 0.017 0.983 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.965 12.888 -0.899 12.956 hybrid contribution -0.020 -0.864 -1.298 1.559 sum 0.945 12.025 -2.197 12.260 Atomic orbital electron populations 1.22610 0.95554 1.03699 1.02563 1.22271 0.94578 0.96042 0.84262 0.86697 1.22911 1.02188 0.96186 0.99935 1.21594 0.81189 0.93933 0.97226 0.93789 1.86597 1.19731 1.84063 1.46583 1.21719 0.98957 0.96437 0.94388 0.91884 1.18860 0.95273 0.90227 0.95077 1.21575 1.23666 0.97569 1.13418 0.92635 1.25886 0.95543 0.99275 0.99020 1.70114 1.32960 1.14710 1.39548 0.85502 0.78320 0.78593 0.79239 1.18656 1.20612 1.20654 1.21957 0.97724 0.81264 0.95080 0.92868 1.21755 1.01550 1.00303 0.96052 1.87863 1.74348 1.24813 1.44326 0.92959 0.90246 0.90841 0.88287 0.90696 0.77119 0.98924 0.98311 0.93065 0.90869 0.92007 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.82 8.07 71.98 0.58 -4.24 16 2 C 0.09 2.33 3.91 30.63 0.12 2.45 16 3 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 4 C -0.17 -4.74 5.46 30.69 0.17 -4.57 16 5 C 0.12 4.35 3.01 30.71 0.09 4.44 16 6 H 0.04 1.76 7.06 -2.39 -0.02 1.74 16 7 O -0.56 -20.08 8.63 -148.98 -1.29 -21.37 16 8 C -0.10 -4.09 1.69 -10.70 -0.02 -4.10 16 9 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 10 C 0.04 2.28 4.14 29.85 0.12 2.40 16 11 C -0.52 -29.75 8.34 25.60 0.21 -29.54 16 12 H 0.06 3.04 7.14 -2.91 -0.02 3.02 16 13 C 0.00 0.00 5.46 84.65 0.46 0.46 16 14 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 15 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 C 0.10 3.68 2.37 30.62 0.07 3.76 16 20 H 0.05 2.15 5.97 -2.39 -0.01 2.14 16 21 C -0.14 -4.96 9.10 71.98 0.66 -4.30 16 22 O -0.39 -13.47 10.24 -148.98 -1.53 -14.99 16 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 25 H 0.07 2.35 3.84 -2.38 -0.01 2.34 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.38 9.74 9.07 -74.06 -0.67 9.06 16 29 H -0.01 -0.43 6.49 -2.39 -0.02 -0.44 16 30 H 0.00 -0.09 7.51 -2.39 -0.02 -0.11 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.37 6.76 -2.39 -0.02 2.35 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -66.73 261.83 2.38 -64.35 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.41 Total: 15.68 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.47 Total: -33.24 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.81 Total: -36.36 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -66.73 2.38 -64.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710021296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.723 kcal (2) G-P(sol) polarization free energy of solvation -66.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds