Wall clock time and date at job start Mon Mar 30 2020 02:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48498 * 109.47137 * 270.00504 * 3 2 1 5 5 H 1.48498 * 109.46892 * 30.00388 * 3 2 1 6 6 H 1.48499 * 109.47006 * 150.00539 * 3 2 1 7 7 C 1.37877 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00222 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47332 * 184.81702 * 9 7 2 11 11 C 1.46957 * 111.00117 * 300.68936 * 10 9 7 12 12 C 1.53050 * 109.36318 * 183.19118 * 11 10 9 13 13 N 1.46960 * 109.36155 * 301.59220 * 12 11 10 14 14 C 1.46957 * 110.87722 * 59.32612 * 13 12 11 15 15 H 1.09005 * 109.49069 * 60.66916 * 14 13 12 16 16 C 1.52999 * 109.48707 * 180.70815 * 14 13 12 17 17 C 1.53003 * 109.47302 * 295.00154 * 16 14 13 18 18 O 1.42899 * 109.47293 * 180.02562 * 17 16 14 19 19 C 1.46964 * 110.99951 * 64.48991 * 10 9 7 20 20 H 0.97001 * 120.00559 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47091 * 64.81121 * 9 7 2 22 22 H 1.09005 * 109.46718 * 304.82177 * 9 7 2 23 23 H 1.08999 * 109.48663 * 303.15234 * 11 10 9 24 24 H 1.08993 * 109.48731 * 63.19775 * 11 10 9 25 25 H 1.09004 * 109.48713 * 181.62950 * 12 11 10 26 26 H 1.08997 * 109.49225 * 61.56708 * 12 11 10 27 27 H 1.00893 * 111.00175 * 295.45828 * 13 12 11 28 28 H 1.08995 * 109.47448 * 55.00015 * 16 14 13 29 29 H 1.09002 * 109.47279 * 175.00022 * 16 14 13 30 30 H 1.09007 * 109.46871 * 299.99863 * 17 16 14 31 31 H 1.08992 * 109.47104 * 59.99712 * 17 16 14 32 32 H 0.96698 * 114.00132 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.48585 * 56.84238 * 19 10 9 34 34 H 1.08995 * 109.48292 * 296.77610 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2015 -3.6132 0.1151 11 6 3.1591 -3.6065 -0.9996 12 6 4.0788 -4.8245 -0.8859 13 7 4.7785 -4.7878 0.4059 14 6 3.8209 -4.7946 1.5206 15 1 3.2244 -5.7060 1.4821 16 6 4.5813 -4.7380 2.8471 17 6 5.4079 -6.0144 3.0160 18 8 6.1176 -5.9618 4.2552 19 6 2.9012 -3.5766 1.4070 20 1 -0.4851 0.8400 0.0004 21 1 0.6903 -2.5949 -0.9303 22 1 0.5616 -2.5205 0.8434 23 1 2.6174 -3.6468 -1.9445 24 1 3.7556 -2.6951 -0.9610 25 1 4.8085 -4.8060 -1.6954 26 1 3.4849 -5.7361 -0.9521 27 1 5.3929 -3.9894 0.4618 28 1 5.2444 -3.8729 2.8492 29 1 3.8712 -4.6534 3.6697 30 1 4.7448 -6.8796 3.0140 31 1 6.1180 -6.0990 2.1935 32 1 6.6643 -6.7404 4.4287 33 1 2.1715 -3.5951 2.2164 34 1 3.4951 -2.6650 1.4731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710497700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:37 Heat of formation + Delta-G solvation = -54.745156 kcal Electronic energy + Delta-G solvation = -14881.038852 eV Core-core repulsion = 12427.207425 eV Total energy + Delta-G solvation = -2453.831427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89502 -36.81429 -34.45898 -32.47671 -31.85294 -28.30533 -27.19018 -24.62223 -22.96162 -22.15900 -20.58604 -19.71102 -17.28518 -16.54372 -15.52210 -15.07830 -14.54196 -14.50686 -14.03533 -13.95982 -13.52953 -13.40047 -12.52829 -11.88255 -11.60403 -11.37471 -11.20965 -11.17120 -11.06184 -10.71328 -10.63287 -10.51014 -10.12560 -9.94266 -9.85520 -9.71763 -8.48393 -8.03517 -7.23084 -6.07726 -4.17500 3.23290 3.30462 3.32870 4.22403 4.35875 4.54019 4.98262 5.19528 5.22745 5.34285 5.53025 5.66576 5.71930 5.79415 5.87638 5.89151 6.04303 6.20372 6.24570 6.32996 6.49568 6.67080 6.74977 7.17590 7.34059 7.45763 7.64431 7.66770 7.83923 7.97797 8.20447 8.24450 8.92176 9.49577 10.97356 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.007509 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.527423 B = 3727.950916 C = 4037.411211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.186 3.814 10 N -0.539 5.539 11 C 0.024 3.976 12 C 0.059 3.941 13 N -0.684 5.684 14 C 0.090 3.910 15 H 0.084 0.916 16 C -0.110 4.110 17 C 0.083 3.917 18 O -0.582 6.582 19 C 0.034 3.966 20 H 0.263 0.737 21 H 0.028 0.972 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.334 0.666 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.374 0.626 33 H 0.068 0.932 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -10.221 2.581 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.061 3.939 10 N -0.262 5.262 11 C -0.106 4.106 12 C -0.071 4.071 13 N -0.313 5.313 14 C -0.020 4.020 15 H 0.102 0.898 16 C -0.149 4.149 17 C 0.005 3.995 18 O -0.387 6.387 19 C -0.096 4.096 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.151 0.849 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.087 0.913 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.700 -10.657 2.607 14.002 hybrid contribution 0.671 2.302 -0.149 2.402 sum 9.371 -8.355 2.457 12.793 Atomic orbital electron populations 1.69937 1.06020 1.26911 1.49950 1.24964 0.94782 0.99174 0.94831 0.86638 0.79888 0.83596 0.78168 1.20582 1.21028 1.20012 1.21710 0.93186 0.92147 1.51948 0.92692 1.19758 0.90865 0.85477 0.97815 1.62634 1.16445 1.46757 1.00414 1.22614 0.95203 0.96931 0.95892 1.22107 0.95774 0.98526 0.90723 1.60961 1.20427 1.47510 1.02431 1.21599 0.92077 0.99093 0.89281 0.89830 1.21498 0.98818 0.97464 0.97084 1.22147 0.94612 0.97622 0.85104 1.86469 1.65009 1.46459 1.40748 1.22547 0.97062 0.96266 0.93707 0.92733 0.95360 0.94811 0.91356 0.94317 0.91243 0.90846 0.84867 0.91474 0.90906 0.94129 0.92478 0.77954 0.91340 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -15.18 7.67 -34.44 -0.26 -15.45 16 8 H 0.05 1.51 5.81 -52.49 -0.31 1.20 16 9 C 0.19 4.84 5.14 -4.98 -0.03 4.82 16 10 N -0.54 -11.57 4.92 -235.92 -1.16 -12.73 16 11 C 0.02 0.46 5.24 -3.77 -0.02 0.44 16 12 C 0.06 0.89 6.72 -3.77 -0.03 0.87 16 13 N -0.68 -10.05 6.02 -106.59 -0.64 -10.69 16 14 C 0.09 1.39 2.59 -67.66 -0.18 1.21 16 15 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 16 C -0.11 -1.54 5.19 -26.73 -0.14 -1.68 16 17 C 0.08 1.00 6.94 37.16 0.26 1.26 16 18 O -0.58 -7.06 13.66 -35.23 -0.48 -7.54 16 19 C 0.03 0.67 4.60 -3.77 -0.02 0.65 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.95 8.12 -51.93 -0.42 0.52 16 23 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.04 0.81 6.45 -51.93 -0.34 0.48 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.33 4.90 8.79 -39.30 -0.35 4.56 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 32 H 0.37 2.69 9.12 45.56 0.42 3.10 16 33 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 34 H 0.04 0.84 6.95 -51.93 -0.36 0.48 16 LS Contribution 272.85 15.07 4.11 4.11 Total: -1.00 -30.15 272.85 -7.66 -37.80 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.69 Total: 4.23 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.51 Total: -6.14 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -1.06 Total: -48.95 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.48 Total: -7.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.15 -7.66 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710497700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.941 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds