Wall clock time and date at job start Mon Mar 30 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48498 * 109.47137 * 270.00504 * 3 2 1 5 5 H 1.48498 * 109.46892 * 30.00388 * 3 2 1 6 6 H 1.48499 * 109.47006 * 150.00539 * 3 2 1 7 7 C 1.37877 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00222 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47332 * 184.81702 * 9 7 2 11 11 C 1.46957 * 111.00117 * 300.68936 * 10 9 7 12 12 C 1.53050 * 109.36318 * 183.19118 * 11 10 9 13 13 N 1.46960 * 109.36155 * 301.59220 * 12 11 10 14 14 C 1.46957 * 110.87722 * 59.32612 * 13 12 11 15 15 H 1.09005 * 109.49069 * 60.66916 * 14 13 12 16 16 C 1.52999 * 109.48707 * 180.70815 * 14 13 12 17 17 C 1.53003 * 109.47302 * 295.00154 * 16 14 13 18 18 O 1.42899 * 109.47293 * 180.02562 * 17 16 14 19 19 C 1.46964 * 110.99951 * 64.48991 * 10 9 7 20 20 H 0.97001 * 120.00559 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47091 * 64.81121 * 9 7 2 22 22 H 1.09005 * 109.46718 * 304.82177 * 9 7 2 23 23 H 1.08999 * 109.48663 * 303.15234 * 11 10 9 24 24 H 1.08993 * 109.48731 * 63.19775 * 11 10 9 25 25 H 1.09004 * 109.48713 * 181.62950 * 12 11 10 26 26 H 1.08997 * 109.49225 * 61.56708 * 12 11 10 27 27 H 1.00893 * 111.00175 * 295.45828 * 13 12 11 28 28 H 1.08995 * 109.47448 * 55.00015 * 16 14 13 29 29 H 1.09002 * 109.47279 * 175.00022 * 16 14 13 30 30 H 1.09007 * 109.46871 * 299.99863 * 17 16 14 31 31 H 1.08992 * 109.47104 * 59.99712 * 17 16 14 32 32 H 0.96698 * 114.00132 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.48585 * 56.84238 * 19 10 9 34 34 H 1.08995 * 109.48292 * 296.77610 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2015 -3.6132 0.1151 11 6 3.1591 -3.6065 -0.9996 12 6 4.0788 -4.8245 -0.8859 13 7 4.7785 -4.7878 0.4059 14 6 3.8209 -4.7946 1.5206 15 1 3.2244 -5.7060 1.4821 16 6 4.5813 -4.7380 2.8471 17 6 5.4079 -6.0144 3.0160 18 8 6.1176 -5.9618 4.2552 19 6 2.9012 -3.5766 1.4070 20 1 -0.4851 0.8400 0.0004 21 1 0.6903 -2.5949 -0.9303 22 1 0.5616 -2.5205 0.8434 23 1 2.6174 -3.6468 -1.9445 24 1 3.7556 -2.6951 -0.9610 25 1 4.8085 -4.8060 -1.6954 26 1 3.4849 -5.7361 -0.9521 27 1 5.3929 -3.9894 0.4618 28 1 5.2444 -3.8729 2.8492 29 1 3.8712 -4.6534 3.6697 30 1 4.7448 -6.8796 3.0140 31 1 6.1180 -6.0990 2.1935 32 1 6.6643 -6.7404 4.4287 33 1 2.1715 -3.5951 2.2164 34 1 3.4951 -2.6650 1.4731 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710497700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:36 Heat of formation + Delta-G solvation = -80.476884 kcal Electronic energy + Delta-G solvation = -14882.154663 eV Core-core repulsion = 12427.207425 eV Total energy + Delta-G solvation = -2454.947238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36177 -37.84061 -36.11038 -34.30566 -33.32729 -29.60145 -29.11577 -26.38063 -24.28684 -23.81644 -21.86834 -21.32493 -18.64350 -18.22926 -16.93732 -16.61607 -16.09849 -15.98404 -15.63617 -15.21038 -15.14194 -14.66388 -14.34143 -13.45410 -13.15460 -13.07154 -12.93007 -12.69501 -12.53738 -12.36540 -12.18411 -11.85838 -11.76285 -11.74888 -11.67871 -10.76697 -10.67429 -9.43413 -9.04637 -8.21924 -6.42717 1.32168 1.32674 1.43165 2.31432 3.02589 3.06837 3.29607 3.57210 4.04910 4.17904 4.33491 4.34697 4.42539 4.45731 4.51988 4.64845 4.79811 4.89194 4.92309 5.00693 5.12633 5.19634 5.23508 5.24672 5.30261 5.66317 5.95597 6.00874 6.14126 6.42668 6.46050 6.77281 6.99790 7.29115 8.80627 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.007509 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.527423 B = 3727.950916 C = 4037.411211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.055 0.945 9 C 0.199 3.801 10 N -0.540 5.540 11 C 0.024 3.976 12 C 0.070 3.930 13 N -0.670 5.670 14 C 0.106 3.894 15 H 0.089 0.911 16 C -0.107 4.107 17 C 0.091 3.909 18 O -0.600 6.600 19 C 0.037 3.963 20 H 0.266 0.734 21 H 0.003 0.997 22 H 0.004 0.996 23 H 0.062 0.938 24 H 0.019 0.981 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.338 0.662 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.396 0.604 33 H 0.056 0.944 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.335 -10.920 2.596 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.263 5.263 11 C -0.106 4.106 12 C -0.059 4.059 13 N -0.299 5.299 14 C -0.005 4.005 15 H 0.107 0.893 16 C -0.146 4.146 17 C 0.013 3.987 18 O -0.408 6.408 19 C -0.093 4.093 20 H 0.075 0.925 21 H 0.021 0.979 22 H 0.022 0.978 23 H 0.080 0.920 24 H 0.037 0.963 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.246 0.754 33 H 0.074 0.926 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.717 -11.389 2.626 15.857 hybrid contribution 0.038 2.478 -0.141 2.482 sum 10.755 -8.911 2.484 14.186 Atomic orbital electron populations 1.70059 1.07615 1.28026 1.50798 1.25847 0.95653 1.02972 0.94366 0.85537 0.78573 0.78954 0.78530 1.19659 1.20463 1.19384 1.21927 0.93222 0.92973 1.51645 0.92730 1.19415 0.91313 0.86949 0.95134 1.62565 1.17158 1.44322 1.02265 1.22729 0.94937 0.98319 0.94636 1.22098 0.95603 0.96396 0.91845 1.60988 1.19637 1.47369 1.01899 1.21446 0.91596 0.96866 0.90589 0.89302 1.21425 0.98722 0.98596 0.95814 1.22001 0.94688 0.96536 0.85446 1.86407 1.65552 1.48284 1.40582 1.22612 0.96969 0.97537 0.92200 0.92470 0.97885 0.97783 0.91995 0.96276 0.88312 0.90135 0.84497 0.92273 0.91404 0.92936 0.91869 0.75383 0.92586 0.96519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 2 C 0.01 0.64 5.46 84.66 0.46 1.10 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.56 -31.46 7.67 25.60 0.20 -31.27 16 8 H 0.05 3.03 5.81 -2.91 -0.02 3.01 16 9 C 0.20 10.74 5.14 85.56 0.44 11.18 16 10 N -0.54 -23.53 4.92 -900.32 -4.43 -27.96 16 11 C 0.02 0.90 5.24 86.31 0.45 1.35 16 12 C 0.07 1.97 6.72 86.31 0.58 2.55 16 13 N -0.67 -18.00 6.02 -491.13 -2.96 -20.95 16 14 C 0.11 3.11 2.59 44.92 0.12 3.23 16 15 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 16 C -0.11 -2.82 5.19 30.59 0.16 -2.66 16 17 C 0.09 1.95 6.94 71.98 0.50 2.45 16 18 O -0.60 -12.99 13.66 -148.98 -2.04 -15.02 16 19 C 0.04 1.45 4.60 86.31 0.40 1.85 16 20 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 21 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 22 H 0.00 0.24 8.12 -2.38 -0.02 0.22 16 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.02 0.80 6.45 -2.39 -0.02 0.78 16 25 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.34 9.09 8.79 -89.70 -0.79 8.30 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 32 H 0.40 4.52 9.12 -74.06 -0.68 3.85 16 33 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 34 H 0.02 0.72 6.95 -2.39 -0.02 0.71 16 Total: -1.00 -65.08 272.85 -4.18 -69.26 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.38 Total: 14.06 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 3.30 Total: -10.23 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -7.10 Total: -104.39 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -2.04 Total: -15.02 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.08 -4.18 -69.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710497700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.212 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds