Wall clock time and date at job start Mon Mar 30 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47086 * 2 1 4 4 N 1.46905 * 109.46689 * 119.99583 * 2 1 3 5 5 C 1.46901 * 110.99912 * 275.00094 * 4 2 1 6 6 C 1.50703 * 109.46691 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00248 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99790 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00221 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99974 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47010 * 60.00296 * 10 8 6 12 12 H 1.48502 * 109.47484 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47303 * 300.00248 * 10 8 6 14 14 C 1.52994 * 109.47697 * 239.99778 * 2 1 3 15 15 H 1.08998 * 109.54474 * 185.11188 * 14 2 1 16 16 C 1.53103 * 109.50526 * 64.99933 * 14 2 1 17 17 N 1.47016 * 109.29298 * 183.24310 * 16 14 2 18 18 C 1.47009 * 110.75376 * 58.59374 * 17 16 14 19 19 C 1.53093 * 109.26071 * 301.38357 * 18 17 16 20 20 O 1.43015 * 109.25965 * 56.84798 * 19 18 17 21 21 H 1.09003 * 109.46608 * 60.00569 * 1 2 3 22 22 H 1.09000 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47377 * 300.00137 * 1 2 3 24 24 H 1.00899 * 110.99880 * 38.96090 * 4 2 1 25 25 H 1.08997 * 109.47329 * 300.00096 * 5 4 2 26 26 H 1.08994 * 109.47151 * 60.00745 * 5 4 2 27 27 H 0.96999 * 120.00350 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.50635 * 63.28401 * 16 14 2 29 29 H 1.09003 * 109.50698 * 303.20013 * 16 14 2 30 30 H 1.00900 * 110.99599 * 294.81404 * 17 16 14 31 31 H 1.09001 * 109.50528 * 61.32115 * 18 17 16 32 32 H 1.09005 * 109.50420 * 181.40891 * 18 17 16 33 33 H 1.08994 * 109.50954 * 176.78275 * 19 18 17 34 34 H 1.09004 * 109.51138 * 296.91641 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0823 0.2227 2.3469 6 6 2.5883 -0.5214 3.5558 7 1 2.8386 -1.5692 3.4793 8 6 2.7326 0.1358 4.7593 9 7 2.4282 1.4118 4.8524 10 14 3.3591 -0.7867 6.2580 11 1 4.7149 -1.3237 5.9776 12 1 3.4238 0.1387 7.4176 13 1 2.4372 -1.9084 6.5700 14 6 2.0401 -0.7212 -1.2491 15 1 3.1263 -0.8018 -1.2056 16 6 1.6356 0.0688 -2.4966 17 7 2.0599 -0.6673 -3.6965 18 6 1.4525 -2.0057 -3.7285 19 6 1.8598 -2.7753 -2.4693 20 8 1.4672 -2.0302 -1.3134 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.4495 -1.4979 1.4101 25 1 2.7587 1.0463 2.1183 26 1 1.0870 0.6164 2.5525 27 1 2.5301 1.8742 5.6990 28 1 2.1169 1.0466 -2.4802 29 1 0.5531 0.1962 -2.5116 30 1 3.0659 -0.7253 -3.7481 31 1 0.3671 -1.9120 -3.7628 32 1 1.7998 -2.5418 -4.6117 33 1 1.3660 -3.7469 -2.4609 34 1 2.9407 -2.9156 -2.4620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711080268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:26 Heat of formation + Delta-G solvation = -49.160884 kcal Electronic energy + Delta-G solvation = -14808.225973 eV Core-core repulsion = 12354.636698 eV Total energy + Delta-G solvation = -2453.589275 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63816 -36.05952 -34.34481 -32.92883 -31.15760 -28.81957 -26.04483 -25.91366 -23.97222 -22.00127 -21.18276 -19.91548 -16.63224 -16.22080 -16.03454 -15.27849 -14.95562 -14.85132 -14.51559 -13.75751 -13.36716 -12.90752 -12.62624 -12.20168 -12.04662 -11.72154 -11.33908 -11.19151 -11.08587 -10.95963 -10.74668 -10.61444 -10.47957 -9.92672 -9.81982 -9.19198 -8.46332 -8.22533 -7.21943 -6.01202 -4.02849 3.35160 3.38576 3.42106 3.92707 4.12810 4.44305 4.73715 4.98058 5.04285 5.17970 5.26571 5.34583 5.40065 5.50727 5.62656 5.68526 5.79415 5.86588 5.89630 6.11397 6.33177 6.42507 6.66778 6.76639 7.17229 7.27999 7.37661 7.47216 7.81574 8.15674 8.46131 8.66264 9.06716 9.61925 11.09870 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.058445 B = 0.006124 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.970173 B = 4571.145605 C = 4794.309163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 H 0.082 0.918 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.067 3.933 15 H 0.062 0.938 16 C 0.022 3.978 17 N -0.685 5.685 18 C 0.020 3.980 19 C 0.022 3.978 20 O -0.366 6.366 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.335 0.665 25 H 0.026 0.974 26 H -0.012 1.012 27 H 0.262 0.738 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.339 0.661 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -4.571 -15.048 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 H 0.100 0.900 4 N -0.312 5.312 5 C 0.067 3.933 6 C -0.552 4.552 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.007 3.993 15 H 0.080 0.920 16 C -0.108 4.108 17 N -0.313 5.313 18 C -0.110 4.110 19 C -0.057 4.057 20 O -0.284 6.284 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.152 0.848 25 H 0.044 0.956 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.977 -4.105 -15.344 16.006 hybrid contribution 0.104 -0.679 1.588 1.730 sum -1.873 -4.784 -13.756 14.684 Atomic orbital electron populations 1.22442 0.97612 1.02147 1.01242 1.21431 0.92766 0.96976 0.90592 0.89952 1.60691 1.55518 1.10452 1.04525 1.19584 0.95226 0.91775 0.86718 1.21164 1.43487 0.96918 0.93680 0.92073 1.24981 0.95664 0.94928 0.98972 1.69949 1.48900 1.09004 1.26002 0.86544 0.79452 0.79426 0.81862 1.20202 1.21348 1.20270 1.22946 0.97379 0.83405 0.95528 0.92020 1.22797 1.02544 0.97548 0.87926 1.60925 1.13923 1.16791 1.39688 1.22662 1.01129 0.89591 0.97589 1.23194 0.99452 0.95971 0.87075 1.88102 1.71145 1.27078 1.42104 0.93208 0.92102 0.92520 0.84757 0.95623 0.99463 0.92889 0.89728 0.89753 0.84365 0.90158 0.90090 0.88861 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 8.72 37.16 0.32 -2.57 16 2 C 0.09 1.69 2.46 -67.71 -0.17 1.52 16 3 H 0.08 1.50 7.80 -51.93 -0.40 1.09 16 4 N -0.68 -15.09 6.19 -107.99 -0.67 -15.75 16 5 C 0.19 5.14 5.24 -4.97 -0.03 5.12 16 6 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.07 1.03 2.73 -26.68 -0.07 0.96 16 15 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 16 C 0.02 0.28 5.87 -3.71 -0.02 0.25 16 17 N -0.68 -7.71 6.93 -113.49 -0.79 -8.50 16 18 C 0.02 0.21 6.76 -3.72 -0.03 0.18 16 19 C 0.02 0.26 7.01 37.21 0.26 0.52 16 20 O -0.37 -5.71 9.54 -35.23 -0.34 -6.04 16 21 H 0.05 0.70 6.50 -51.93 -0.34 0.36 16 22 H 0.06 1.02 7.54 -51.93 -0.39 0.63 16 23 H 0.06 1.02 7.45 -51.93 -0.39 0.63 16 24 H 0.34 7.45 8.46 -39.29 -0.33 7.11 16 25 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 26 H -0.01 -0.35 7.44 -51.93 -0.39 -0.73 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 30 H 0.34 3.44 8.89 -39.29 -0.35 3.09 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -30.60 273.92 -7.52 -38.12 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.42 Total: 5.14 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.15 Total: -7.68 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.72 Total: -50.63 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.34 Total: -6.04 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.60 -7.52 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711080268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.045 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds