Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47500 * 2 1 4 4 N 1.46904 * 109.46953 * 239.99953 * 2 1 3 5 5 C 1.46894 * 110.99869 * 85.00246 * 4 2 1 6 6 C 1.50701 * 109.47550 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99406 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00318 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47259 * 89.99983 * 10 8 6 12 12 H 1.48503 * 109.47021 * 209.99940 * 10 8 6 13 13 H 1.48498 * 109.46972 * 329.99912 * 10 8 6 14 14 C 1.53005 * 109.46978 * 120.00610 * 2 1 3 15 15 H 1.08998 * 109.50212 * 300.08348 * 14 2 1 16 16 C 1.53103 * 109.50605 * 179.97438 * 14 2 1 17 17 N 1.47015 * 109.25538 * 183.16831 * 16 14 2 18 18 C 1.47016 * 110.75076 * 58.61911 * 17 16 14 19 19 C 1.53103 * 109.29298 * 301.35892 * 18 17 16 20 20 O 1.43016 * 109.54422 * 60.19318 * 14 2 1 21 21 H 1.09002 * 109.47814 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47262 * 299.99819 * 1 2 3 23 23 H 1.09002 * 109.46926 * 59.99462 * 1 2 3 24 24 H 1.00901 * 110.99917 * 208.95927 * 4 2 1 25 25 H 1.08998 * 109.47235 * 300.00168 * 5 4 2 26 26 H 1.08999 * 109.47216 * 59.99936 * 5 4 2 27 27 H 0.97004 * 119.99807 * 180.02562 * 9 8 6 28 28 H 1.08998 * 109.50706 * 63.23533 * 16 14 2 29 29 H 1.08997 * 109.53776 * 303.12374 * 16 14 2 30 30 H 1.00893 * 110.99545 * 182.38983 * 17 16 14 31 31 H 1.09002 * 109.50934 * 61.31617 * 18 17 16 32 32 H 1.09003 * 109.50733 * 181.40211 * 18 17 16 33 33 H 1.09004 * 109.50456 * 176.81005 * 19 18 17 34 34 H 1.09008 * 109.50567 * 296.93791 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5215 -3.5558 7 1 2.8380 -1.5695 -3.4794 8 6 2.7328 0.1357 -4.7591 9 7 2.4294 1.4120 -4.8520 10 14 3.3607 -0.7865 -6.2575 11 1 2.2125 -1.3694 -6.9971 12 1 4.0957 0.1514 -7.1438 13 1 4.2731 -1.8744 -5.8226 14 6 2.0400 -0.7214 1.2492 15 1 1.6757 -0.2089 2.1396 16 6 3.5710 -0.7225 1.2497 17 7 4.0549 -1.4821 2.4117 18 6 3.5499 -2.8624 2.3787 19 6 2.0191 -2.8408 2.3674 20 8 1.5678 -2.0714 1.2484 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.9172 -1.1206 -1.0287 25 1 1.0871 0.6163 -2.5525 26 1 2.7588 1.0461 -2.1182 27 1 2.5306 1.8742 -5.6988 28 1 3.9356 0.3031 1.3078 29 1 3.9355 -1.1871 0.3336 30 1 5.0626 -1.4668 2.4594 31 1 3.9135 -3.3617 1.4806 32 1 3.8998 -3.3992 3.2605 33 1 1.6413 -3.8601 2.2858 34 1 1.6546 -2.3897 3.2903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711080272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -44.327256 kcal Electronic energy + Delta-G solvation = -14938.521498 eV Core-core repulsion = 12485.141826 eV Total energy + Delta-G solvation = -2453.379673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46907 -35.90874 -34.45224 -32.84716 -30.78462 -29.23078 -26.57488 -25.77879 -23.77833 -21.80256 -20.90439 -19.51532 -17.00697 -16.29341 -16.01851 -15.07008 -14.79282 -14.42960 -14.23688 -14.19631 -13.80051 -12.98890 -12.72109 -12.24128 -11.68694 -11.56387 -11.48961 -11.25718 -11.11325 -10.83849 -10.62732 -10.37339 -10.20591 -9.71338 -9.49499 -9.12658 -8.52263 -8.45186 -7.18009 -6.00852 -4.02303 3.33498 3.39018 3.42858 3.94906 4.08455 4.44971 4.93379 5.03180 5.12633 5.21682 5.25500 5.34744 5.35776 5.46533 5.66938 5.79216 5.82752 5.99348 6.06685 6.16891 6.44165 6.57641 6.79523 6.92307 7.18412 7.29729 7.44277 7.45979 7.83453 8.18027 8.47650 8.67786 9.07593 9.62521 11.10302 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039529 B = 0.007161 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.176334 B = 3909.370712 C = 4200.234423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 H 0.047 0.953 4 N -0.677 5.677 5 C 0.193 3.807 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.097 3.903 15 H 0.062 0.938 16 C 0.018 3.982 17 N -0.689 5.689 18 C 0.018 3.982 19 C 0.061 3.939 20 O -0.358 6.358 21 H 0.065 0.935 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.327 0.673 25 H 0.029 0.971 26 H -0.016 1.016 27 H 0.261 0.739 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.343 0.657 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 -5.117 14.249 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.064 0.936 4 N -0.310 5.310 5 C 0.066 3.934 6 C -0.551 4.551 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.039 3.961 15 H 0.080 0.920 16 C -0.112 4.112 17 N -0.320 5.320 18 C -0.112 4.112 19 C -0.017 4.017 20 O -0.276 6.276 21 H 0.084 0.916 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.146 0.854 25 H 0.047 0.953 26 H 0.002 0.998 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.161 0.839 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.273 -5.062 14.215 15.092 hybrid contribution 1.937 -0.106 -1.151 2.256 sum 2.210 -5.169 13.063 14.221 Atomic orbital electron populations 1.21660 0.94581 1.02382 1.00285 1.21520 0.96653 0.94814 0.89136 0.93568 1.60673 1.32630 1.34386 1.03354 1.19615 0.96461 0.90136 0.87147 1.21198 1.43070 0.96691 0.94122 0.92070 1.24984 0.95746 0.94891 0.98967 1.69967 1.49069 1.08969 1.25817 0.86497 0.78903 0.79442 0.82536 1.20587 1.21328 1.19936 1.22354 0.91451 0.83834 0.98506 0.92003 1.22732 0.97112 0.99215 0.92123 1.60586 1.15297 1.13202 1.42918 1.22625 0.97357 0.89957 1.01250 1.22615 0.92362 0.96574 0.90146 1.88182 1.72144 1.22522 1.44778 0.91623 0.93951 0.92456 0.85365 0.95261 0.99847 0.92962 0.89877 0.93147 0.83935 0.93981 0.90165 0.88798 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.27 37.16 0.34 -1.98 16 2 C 0.09 1.67 2.49 -67.71 -0.17 1.50 16 3 H 0.05 0.87 7.80 -51.93 -0.40 0.47 16 4 N -0.68 -15.12 6.16 -107.99 -0.67 -15.79 16 5 C 0.19 5.16 5.24 -4.98 -0.03 5.14 16 6 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 7 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 10 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.10 1.54 2.57 -26.68 -0.07 1.47 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.02 0.26 5.87 -3.71 -0.02 0.24 16 17 N -0.69 -8.44 6.92 -113.49 -0.79 -9.22 16 18 C 0.02 0.20 6.76 -3.71 -0.03 0.18 16 19 C 0.06 0.76 7.02 37.21 0.26 1.02 16 20 O -0.36 -5.89 9.67 -35.23 -0.34 -6.23 16 21 H 0.06 1.21 7.69 -51.93 -0.40 0.81 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.09 7.45 -51.93 -0.39 0.71 16 24 H 0.33 7.11 6.12 -39.29 -0.24 6.87 16 25 H 0.03 0.84 7.44 -51.93 -0.39 0.46 16 26 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.82 6.10 -51.93 -0.32 0.50 16 30 H 0.34 3.54 8.90 -39.30 -0.35 3.19 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -31.12 273.57 -7.48 -38.61 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.41 Total: 4.03 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.12 Total: -6.10 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.71 Total: -51.45 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.34 Total: -6.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.12 -7.48 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711080272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.722 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds