Wall clock time and date at job start Mon Mar 30 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47500 * 2 1 4 4 N 1.46904 * 109.46953 * 239.99953 * 2 1 3 5 5 C 1.46894 * 110.99869 * 85.00246 * 4 2 1 6 6 C 1.50701 * 109.47550 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99406 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00318 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47259 * 89.99983 * 10 8 6 12 12 H 1.48503 * 109.47021 * 209.99940 * 10 8 6 13 13 H 1.48498 * 109.46972 * 329.99912 * 10 8 6 14 14 C 1.53005 * 109.46978 * 120.00610 * 2 1 3 15 15 H 1.08998 * 109.50212 * 300.08348 * 14 2 1 16 16 C 1.53103 * 109.50605 * 179.97438 * 14 2 1 17 17 N 1.47015 * 109.25538 * 183.16831 * 16 14 2 18 18 C 1.47016 * 110.75076 * 58.61911 * 17 16 14 19 19 C 1.53103 * 109.29298 * 301.35892 * 18 17 16 20 20 O 1.43016 * 109.54422 * 60.19318 * 14 2 1 21 21 H 1.09002 * 109.47814 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47262 * 299.99819 * 1 2 3 23 23 H 1.09002 * 109.46926 * 59.99462 * 1 2 3 24 24 H 1.00901 * 110.99917 * 208.95927 * 4 2 1 25 25 H 1.08998 * 109.47235 * 300.00168 * 5 4 2 26 26 H 1.08999 * 109.47216 * 59.99936 * 5 4 2 27 27 H 0.97004 * 119.99807 * 180.02562 * 9 8 6 28 28 H 1.08998 * 109.50706 * 63.23533 * 16 14 2 29 29 H 1.08997 * 109.53776 * 303.12374 * 16 14 2 30 30 H 1.00893 * 110.99545 * 182.38983 * 17 16 14 31 31 H 1.09002 * 109.50934 * 61.31617 * 18 17 16 32 32 H 1.09003 * 109.50733 * 181.40211 * 18 17 16 33 33 H 1.09004 * 109.50456 * 176.81005 * 19 18 17 34 34 H 1.09008 * 109.50567 * 296.93791 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5215 -3.5558 7 1 2.8380 -1.5695 -3.4794 8 6 2.7328 0.1357 -4.7591 9 7 2.4294 1.4120 -4.8520 10 14 3.3607 -0.7865 -6.2575 11 1 2.2125 -1.3694 -6.9971 12 1 4.0957 0.1514 -7.1438 13 1 4.2731 -1.8744 -5.8226 14 6 2.0400 -0.7214 1.2492 15 1 1.6757 -0.2089 2.1396 16 6 3.5710 -0.7225 1.2497 17 7 4.0549 -1.4821 2.4117 18 6 3.5499 -2.8624 2.3787 19 6 2.0191 -2.8408 2.3674 20 8 1.5678 -2.0714 1.2484 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.9172 -1.1206 -1.0287 25 1 1.0871 0.6163 -2.5525 26 1 2.7588 1.0461 -2.1182 27 1 2.5306 1.8742 -5.6988 28 1 3.9356 0.3031 1.3078 29 1 3.9355 -1.1871 0.3336 30 1 5.0626 -1.4668 2.4594 31 1 3.9135 -3.3617 1.4806 32 1 3.8998 -3.3992 3.2605 33 1 1.6413 -3.8601 2.2858 34 1 1.6546 -2.3897 3.2903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711080272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:31 Heat of formation + Delta-G solvation = -69.326603 kcal Electronic energy + Delta-G solvation = -14939.605551 eV Core-core repulsion = 12485.141826 eV Total energy + Delta-G solvation = -2454.463726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66118 -37.51190 -35.56133 -34.90934 -32.38142 -30.63261 -28.19669 -27.36573 -24.97402 -23.78586 -22.17125 -20.86176 -18.74150 -17.75740 -17.38770 -16.80807 -16.19234 -15.81578 -15.61320 -15.30109 -15.14679 -14.56152 -14.45115 -13.93898 -13.53576 -13.03834 -12.86985 -12.77568 -12.67741 -12.41260 -12.25528 -12.06582 -11.76777 -11.37358 -11.16295 -10.66709 -10.61341 -9.56866 -9.03958 -8.23428 -6.34505 1.39230 1.41568 1.52453 2.38870 2.81078 3.08136 3.09647 3.57879 3.78717 3.89809 4.06778 4.12838 4.28507 4.40004 4.46789 4.62164 4.66190 4.80087 4.89485 4.94116 5.01415 5.05813 5.14835 5.28679 5.43908 5.62292 5.76665 6.03546 6.29279 6.30785 6.49547 6.74773 6.89374 7.36467 8.88139 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039529 B = 0.007161 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.176334 B = 3909.370712 C = 4200.234423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.083 3.917 3 H 0.043 0.957 4 N -0.677 5.677 5 C 0.210 3.790 6 C -0.537 4.537 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.933 5.933 10 Si 0.972 3.028 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.106 3.894 15 H 0.078 0.922 16 C 0.022 3.978 17 N -0.684 5.684 18 C 0.018 3.982 19 C 0.054 3.946 20 O -0.386 6.386 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.330 0.670 25 H 0.001 0.999 26 H -0.039 1.039 27 H 0.266 0.734 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.356 0.644 31 H 0.030 0.970 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -6.277 15.141 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.027 4.027 3 H 0.060 0.940 4 N -0.311 5.311 5 C 0.083 3.917 6 C -0.575 4.575 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.573 5.573 10 Si 0.796 3.204 11 H -0.199 1.199 12 H -0.204 1.204 13 H -0.189 1.189 14 C 0.047 3.953 15 H 0.096 0.904 16 C -0.108 4.108 17 N -0.316 5.316 18 C -0.111 4.111 19 C -0.023 4.023 20 O -0.305 6.305 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.052 0.948 24 H 0.150 0.850 25 H 0.019 0.981 26 H -0.022 1.022 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.175 0.825 31 H 0.048 0.952 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.893 -6.236 15.139 16.398 hybrid contribution 1.717 0.246 -1.341 2.193 sum 2.611 -5.991 13.798 15.267 Atomic orbital electron populations 1.21604 0.93934 1.01972 1.00747 1.21643 0.97165 0.94825 0.89076 0.93965 1.60565 1.32856 1.33760 1.03896 1.19235 0.93955 0.89940 0.88596 1.21533 1.43734 0.96841 0.95381 0.92229 1.25935 0.95596 0.95773 1.02279 1.70089 1.49688 1.10592 1.26924 0.85345 0.78523 0.78274 0.78217 1.19872 1.20421 1.18896 1.22169 0.92118 0.83905 0.97075 0.90378 1.22597 0.96333 0.99741 0.92134 1.60590 1.16312 1.13531 1.41180 1.22692 0.96738 0.89558 1.02129 1.22887 0.93093 0.97007 0.89322 1.88132 1.72805 1.22747 1.46780 0.92370 0.90692 0.94758 0.84989 0.98076 1.02184 0.92569 0.89420 0.95344 0.82544 0.95161 0.87118 0.87079 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 9.27 71.98 0.67 -3.75 16 2 C 0.08 3.11 2.49 44.92 0.11 3.23 16 3 H 0.04 1.62 7.80 -2.39 -0.02 1.60 16 4 N -0.68 -30.93 6.16 -495.59 -3.05 -33.98 16 5 C 0.21 11.67 5.24 85.56 0.45 12.12 16 6 C -0.54 -31.66 9.32 25.60 0.24 -31.42 16 7 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 8 C 0.00 0.14 5.46 84.65 0.46 0.60 16 9 N -0.93 -57.24 13.29 21.44 0.28 -56.96 16 10 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 14 C 0.11 3.22 2.57 30.63 0.08 3.30 16 15 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 16 C 0.02 0.62 5.87 86.32 0.51 1.13 16 17 N -0.68 -15.22 6.92 -512.97 -3.55 -18.77 16 18 C 0.02 0.37 6.76 86.32 0.58 0.96 16 19 C 0.05 1.21 7.02 72.02 0.51 1.71 16 20 O -0.39 -12.16 9.67 -148.98 -1.44 -13.60 16 21 H 0.06 2.13 7.69 -2.39 -0.02 2.11 16 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.03 1.34 7.45 -2.39 -0.02 1.32 16 24 H 0.33 14.64 6.12 -89.69 -0.55 14.09 16 25 H 0.00 0.07 7.44 -2.39 -0.02 0.05 16 26 H -0.04 -2.32 8.06 -2.39 -0.02 -2.34 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 0.92 6.10 -2.39 -0.01 0.91 16 30 H 0.36 6.53 8.90 -89.70 -0.80 5.73 16 31 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -66.85 273.57 -2.40 -69.25 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.26 Total: 19.00 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 3.60 Total: -12.12 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -6.32 Total: -109.71 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.44 Total: -13.60 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.85 -2.40 -69.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711080272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.079 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds