Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99767 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46783 * 60.00612 * 9 7 5 11 11 H 1.48503 * 109.47207 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47760 * 300.00441 * 9 7 5 13 13 O 1.42905 * 109.47264 * 240.00288 * 2 1 3 14 14 C 1.42900 * 114.00074 * 89.99687 * 13 2 1 15 15 C 1.52994 * 109.47191 * 180.02562 * 14 13 2 16 16 O 1.42898 * 109.47381 * 65.00327 * 15 14 13 17 17 C 1.42900 * 114.00373 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.49955 * 218.74506 * 17 16 15 19 19 C 1.53001 * 117.49639 * 150.08154 * 17 16 15 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 24 24 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 25 25 H 0.97005 * 119.99608 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47253 * 300.00831 * 14 13 2 27 27 H 1.09003 * 109.46979 * 59.99699 * 14 13 2 28 28 H 1.09010 * 109.47282 * 184.99937 * 15 14 13 29 29 H 1.09002 * 109.47166 * 304.99958 * 15 14 13 30 30 H 1.08995 * 115.54835 * 4.41990 * 17 16 15 31 31 H 1.08998 * 117.50031 * 359.97438 * 18 17 16 32 32 H 1.08998 * 117.49840 * 145.02258 * 18 17 16 33 33 H 1.08997 * 117.49574 * 214.98037 * 19 17 16 34 34 H 1.08996 * 117.50381 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0921 -1.0614 2.4365 10 1 6.4854 0.3694 2.4951 11 1 6.5870 -1.7603 3.6497 12 1 6.6839 -1.6883 1.2274 13 8 2.0064 -0.6736 -1.1668 14 6 2.2001 0.1830 -2.2941 15 6 2.7079 -0.6406 -3.4792 16 8 1.6996 -1.5705 -3.8800 17 6 2.0745 -2.3934 -4.9865 18 6 1.0003 -2.7065 -6.0300 19 6 1.4675 -3.7959 -5.0614 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.6054 -0.2618 2.1369 24 1 1.7517 -1.7715 1.2055 25 1 4.0608 -2.2431 4.0357 26 1 1.2537 0.6548 -2.5588 27 1 2.9319 0.9515 -2.0450 28 1 2.9400 0.0245 -4.3111 29 1 3.6067 -1.1832 -3.1861 30 1 3.0981 -2.2686 -5.3396 31 1 0.0075 -2.2851 -5.8724 32 1 1.3173 -2.7879 -7.0697 33 1 2.0917 -4.5935 -5.4643 34 1 0.7826 -4.0911 -4.2666 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712041914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = -76.660911 kcal Electronic energy + Delta-G solvation = -14347.464073 eV Core-core repulsion = 11860.389557 eV Total energy + Delta-G solvation = -2487.074516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.52385 -37.39383 -34.92334 -33.11031 -31.32420 -28.71642 -27.29500 -23.20398 -22.40920 -22.13650 -21.87308 -20.04912 -17.15639 -16.33984 -16.18895 -15.28645 -14.78399 -14.51129 -14.31634 -13.74949 -13.34013 -12.65556 -12.25483 -11.87077 -11.67437 -11.56847 -11.52586 -11.25142 -11.10292 -10.77788 -10.63793 -10.52205 -10.42104 -9.99360 -9.34791 -9.11341 -8.99641 -8.53272 -8.29031 -5.92027 -3.92215 3.37758 3.41798 3.44448 3.59816 3.84320 4.43070 4.52435 4.79646 4.95169 5.11759 5.33245 5.44189 5.50049 5.51572 5.59011 5.68582 5.88451 5.90724 5.91162 6.00756 6.12087 6.13808 6.20444 6.42402 6.83544 7.00847 7.37690 7.60380 7.73362 8.05721 8.25859 8.50944 9.11344 9.69475 11.19758 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.006708 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.479747 B = 4173.242975 C = 4603.520357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.506 4.506 6 H 0.053 0.947 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 O -0.360 6.360 14 C 0.063 3.937 15 C 0.068 3.932 16 O -0.345 6.345 17 C 0.019 3.981 18 C -0.194 4.194 19 C -0.184 4.184 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.030 0.970 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 1.695 -15.336 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.545 4.545 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 O -0.279 6.279 14 C -0.015 4.015 15 C -0.009 4.009 16 O -0.263 6.263 17 C -0.040 4.040 18 C -0.231 4.231 19 C -0.222 4.222 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.276 1.390 -15.066 15.480 hybrid contribution 1.186 0.312 -0.019 1.227 sum -2.090 1.702 -15.085 15.324 Atomic orbital electron populations 1.22312 0.98184 1.01947 1.00348 1.22388 0.91083 0.95965 0.87246 0.93694 1.19238 0.96178 0.96432 0.89475 1.21097 0.91967 1.33959 1.07429 0.92846 1.24993 0.98236 0.95513 0.95842 1.69954 1.35466 1.36282 1.12163 0.86666 0.86019 0.78049 0.77283 1.20391 1.21357 1.20328 1.88084 1.86651 1.33934 1.19184 1.22392 0.99320 0.92750 0.86994 1.22634 0.91644 0.91401 0.95203 1.87941 1.40148 1.50365 1.47868 1.22619 0.96197 0.94277 0.90902 1.23386 1.00517 1.03649 0.95550 1.23319 1.04369 0.92169 1.02294 0.92318 0.92344 0.94136 0.95234 0.95603 0.93051 0.93736 0.92242 0.92455 0.91978 0.87508 0.88363 0.88582 0.88382 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.53 37.16 0.35 -2.84 16 2 C 0.09 2.00 2.67 -26.74 -0.07 1.93 16 3 H 0.04 0.95 7.79 -51.93 -0.40 0.55 16 4 C 0.02 0.64 4.68 -27.89 -0.13 0.51 16 5 C -0.51 -14.74 8.88 -34.44 -0.31 -15.05 16 6 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 O -0.36 -8.02 9.71 -40.08 -0.39 -8.41 16 14 C 0.06 1.08 6.13 37.15 0.23 1.31 16 15 C 0.07 1.02 6.19 37.15 0.23 1.25 16 16 O -0.34 -5.72 10.56 -40.08 -0.42 -6.15 16 17 C 0.02 0.24 6.44 -26.73 -0.17 0.07 16 18 C -0.19 -2.09 10.48 -26.69 -0.28 -2.37 16 19 C -0.18 -2.18 10.48 -26.69 -0.28 -2.46 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 23 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.04 0.71 7.87 -51.93 -0.41 0.30 16 27 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 1.16 7.93 -51.93 -0.41 0.75 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -32.35 292.36 -7.04 -39.39 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.82 Total: -3.37 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -0.53 Total: -16.14 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.89 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.81 Total: -14.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.35 -7.04 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712041914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.273 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds