Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99767 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46783 * 60.00612 * 9 7 5 11 11 H 1.48503 * 109.47207 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47760 * 300.00441 * 9 7 5 13 13 O 1.42905 * 109.47264 * 240.00288 * 2 1 3 14 14 C 1.42900 * 114.00074 * 89.99687 * 13 2 1 15 15 C 1.52994 * 109.47191 * 180.02562 * 14 13 2 16 16 O 1.42898 * 109.47381 * 65.00327 * 15 14 13 17 17 C 1.42900 * 114.00373 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.49955 * 218.74506 * 17 16 15 19 19 C 1.53001 * 117.49639 * 150.08154 * 17 16 15 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 24 24 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 25 25 H 0.97005 * 119.99608 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47253 * 300.00831 * 14 13 2 27 27 H 1.09003 * 109.46979 * 59.99699 * 14 13 2 28 28 H 1.09010 * 109.47282 * 184.99937 * 15 14 13 29 29 H 1.09002 * 109.47166 * 304.99958 * 15 14 13 30 30 H 1.08995 * 115.54835 * 4.41990 * 17 16 15 31 31 H 1.08998 * 117.50031 * 359.97438 * 18 17 16 32 32 H 1.08998 * 117.49840 * 145.02258 * 18 17 16 33 33 H 1.08997 * 117.49574 * 214.98037 * 19 17 16 34 34 H 1.08996 * 117.50381 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0921 -1.0614 2.4365 10 1 6.4854 0.3694 2.4951 11 1 6.5870 -1.7603 3.6497 12 1 6.6839 -1.6883 1.2274 13 8 2.0064 -0.6736 -1.1668 14 6 2.2001 0.1830 -2.2941 15 6 2.7079 -0.6406 -3.4792 16 8 1.6996 -1.5705 -3.8800 17 6 2.0745 -2.3934 -4.9865 18 6 1.0003 -2.7065 -6.0300 19 6 1.4675 -3.7959 -5.0614 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.6054 -0.2618 2.1369 24 1 1.7517 -1.7715 1.2055 25 1 4.0608 -2.2431 4.0357 26 1 1.2537 0.6548 -2.5588 27 1 2.9319 0.9515 -2.0450 28 1 2.9400 0.0245 -4.3111 29 1 3.6067 -1.1832 -3.1861 30 1 3.0981 -2.2686 -5.3396 31 1 0.0075 -2.2851 -5.8724 32 1 1.3173 -2.7879 -7.0697 33 1 2.0917 -4.5935 -5.4643 34 1 0.7826 -4.0911 -4.2666 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712041914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = -97.401081 kcal Electronic energy + Delta-G solvation = -14348.363435 eV Core-core repulsion = 11860.389557 eV Total energy + Delta-G solvation = -2487.973878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71511 -38.87597 -36.05458 -35.14231 -33.13893 -30.08352 -29.28449 -25.22310 -23.46653 -23.27726 -22.84869 -21.87274 -18.49385 -18.24824 -17.78656 -16.69829 -16.23919 -16.03555 -15.66227 -15.19309 -14.66039 -14.32365 -13.77555 -13.54450 -13.47016 -13.23327 -12.81633 -12.59510 -12.48044 -12.41501 -12.27152 -12.21927 -11.71333 -11.36421 -11.26166 -11.17603 -10.55328 -10.21337 -10.02785 -8.16796 -6.25939 1.39368 1.43458 1.51004 2.42901 2.56951 2.90850 2.96778 3.18463 3.90913 4.01458 4.07185 4.19676 4.26360 4.32551 4.40982 4.50120 4.56741 4.62652 4.65941 4.76004 4.83181 4.91648 5.02266 5.18825 5.24844 5.25445 5.44508 5.53289 5.81449 6.24990 6.32789 6.64291 6.86680 7.40914 8.95394 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.006708 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.479747 B = 4173.242975 C = 4603.520357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 H 0.056 0.944 4 C 0.026 3.974 5 C -0.526 4.526 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.393 6.393 14 C 0.054 3.946 15 C 0.070 3.930 16 O -0.378 6.378 17 C -0.006 4.006 18 C -0.174 4.174 19 C -0.195 4.195 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.013 0.987 24 H -0.012 1.012 25 H 0.263 0.737 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 2.626 -17.197 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.196 1.196 13 O -0.313 6.313 14 C -0.023 4.023 15 C -0.006 4.006 16 O -0.297 6.297 17 C -0.063 4.063 18 C -0.211 4.211 19 C -0.232 4.232 20 H 0.089 0.911 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.031 0.969 24 H 0.006 0.994 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.317 2.333 -16.946 17.262 hybrid contribution 0.847 -0.005 0.519 0.994 sum -1.470 2.328 -16.427 16.656 Atomic orbital electron populations 1.22204 0.95645 1.01760 1.02263 1.22144 0.93039 0.95293 0.85625 0.92618 1.19125 0.95678 0.94593 0.91743 1.21475 0.93175 1.34089 1.07628 0.92497 1.25965 1.03823 0.94934 0.95329 1.70097 1.37683 1.37110 1.12845 0.85507 0.79266 0.78814 0.77485 1.18778 1.20803 1.19632 1.88023 1.87022 1.35909 1.20301 1.22712 1.00611 0.92976 0.85970 1.22679 0.90640 0.91686 0.95636 1.87879 1.41090 1.51269 1.49501 1.22994 0.98010 0.94370 0.90942 1.23449 0.99501 1.01686 0.96465 1.23401 1.04553 0.92718 1.02506 0.91133 0.93602 0.91410 0.96906 0.99384 0.92861 0.92255 0.91024 0.88527 0.93227 0.85433 0.89062 0.85639 0.86292 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 9.53 71.98 0.69 -5.25 16 2 C 0.10 4.27 2.67 30.59 0.08 4.35 16 3 H 0.06 2.31 7.79 -2.39 -0.02 2.29 16 4 C 0.03 1.43 4.68 29.85 0.14 1.57 16 5 C -0.53 -31.04 8.88 25.60 0.23 -30.82 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 9 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 O -0.39 -17.53 9.71 -144.34 -1.40 -18.93 16 14 C 0.05 1.77 6.13 71.98 0.44 2.21 16 15 C 0.07 2.00 6.19 71.98 0.45 2.44 16 16 O -0.38 -12.21 10.56 -144.34 -1.52 -13.73 16 17 C -0.01 -0.13 6.44 30.59 0.20 0.06 16 18 C -0.17 -3.37 10.48 30.62 0.32 -3.05 16 19 C -0.19 -4.40 10.48 30.62 0.32 -4.08 16 20 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 21 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.07 2.11 7.87 -2.38 -0.02 2.09 16 23 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 26 H 0.06 1.76 7.87 -2.39 -0.02 1.74 16 27 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 28 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.13 2.47 7.93 -2.39 -0.02 2.45 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -70.72 292.36 3.75 -66.97 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.04 Total: 8.94 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.32 Total: -32.30 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.28 Total: -58.44 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -2.93 Total: -32.66 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.72 3.75 -66.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712041914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.433 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds