Wall clock time and date at job start Mon Mar 30 2020 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35955 * 116.99913 * 2 1 4 4 N 1.30345 * 121.64198 * 0.26216 * 3 2 1 5 5 S 1.69584 * 107.17271 * 180.22991 * 4 3 2 6 6 C 1.72026 * 95.78185 * 359.73037 * 5 4 3 7 7 C 1.35058 * 105.60207 * 0.02562 * 6 5 4 8 8 C 1.50696 * 122.64122 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47358 * 145.02060 * 8 7 6 10 10 O 1.42903 * 109.47131 * 25.01700 * 8 7 6 11 11 C 1.50707 * 109.47163 * 265.02503 * 8 7 6 12 12 H 1.07995 * 119.99310 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99931 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00169 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99871 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46975 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46997 * 119.99957 * 15 13 11 18 18 H 1.48498 * 109.47461 * 240.00253 * 15 13 11 19 19 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47208 * 300.00347 * 1 2 3 21 21 H 1.09005 * 109.46719 * 60.00127 * 1 2 3 22 22 H 1.07997 * 127.19875 * 179.97438 * 6 5 4 23 23 H 0.96700 * 114.00311 * 300.00591 * 10 8 7 24 24 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 7 1.3679 2.3244 0.0051 5 16 2.4908 3.5951 -0.0034 6 6 3.8881 2.5917 -0.0058 7 6 3.4243 1.3232 -0.0006 8 6 4.3370 0.1241 -0.0001 9 1 3.8890 -0.6733 0.5929 10 8 5.5989 0.4861 0.5645 11 6 4.5385 -0.3544 -1.4149 12 1 4.0538 0.1583 -2.2324 13 6 5.3417 -1.4467 -1.6653 14 7 5.9324 -2.0707 -0.6697 15 14 5.5909 -2.0402 -3.4190 16 1 4.8235 -1.1732 -4.3488 17 1 7.0344 -1.9777 -3.7622 18 1 5.1135 -3.4411 -3.5400 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 4.9202 2.9095 -0.0113 23 1 6.0555 1.1921 0.0868 24 1 6.4971 -2.8394 -0.8459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712883821.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:48 Heat of formation + Delta-G solvation = -43.269812 kcal Electronic energy + Delta-G solvation = -12463.627969 eV Core-core repulsion = 10083.662170 eV Total energy + Delta-G solvation = -2379.965799 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.71607 -36.77795 -34.98030 -32.20069 -30.60773 -27.69967 -26.82737 -23.82201 -21.86842 -19.44128 -17.63633 -17.12730 -16.72149 -15.61461 -14.74517 -14.61811 -14.45052 -13.34034 -12.96485 -12.78846 -12.44723 -11.69316 -11.35101 -11.05194 -10.96554 -10.71703 -10.66167 -10.56039 -10.20215 -9.37589 -8.96299 -8.61639 -8.39911 -7.56071 -6.04701 -4.23152 1.29657 1.98165 2.24918 3.13106 3.25614 3.34035 3.38896 3.71983 4.37835 5.16625 5.31638 5.45514 5.51948 5.78958 5.81410 6.14181 6.28946 6.48807 6.70351 7.56543 7.70748 7.79260 8.06593 8.77309 9.24195 9.51135 10.98827 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.033168 B = 0.010877 C = 0.009624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.991584 B = 2573.527397 C = 2908.603302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.276 6.276 3 C 0.327 3.673 4 N -0.542 5.542 5 S 0.217 5.783 6 C -0.194 4.194 7 C -0.152 4.152 8 C 0.290 3.710 9 H 0.077 0.923 10 O -0.557 6.557 11 C -0.557 4.557 12 H 0.056 0.944 13 C 0.081 3.919 14 N -0.858 5.858 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 H 0.097 0.903 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.184 0.816 23 H 0.345 0.655 24 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 7.031 0.692 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.181 6.181 3 C 0.111 3.889 4 N -0.382 5.382 5 S 0.366 5.634 6 C -0.340 4.340 7 C -0.169 4.169 8 C 0.229 3.771 9 H 0.094 0.906 10 O -0.359 6.359 11 C -0.595 4.595 12 H 0.074 0.926 13 C -0.125 4.125 14 N -0.494 5.494 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 H 0.116 0.884 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.201 0.799 23 H 0.189 0.811 24 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.372 7.744 1.198 10.759 hybrid contribution 1.064 -1.364 -1.455 2.260 sum -6.308 6.380 -0.257 8.976 Atomic orbital electron populations 1.22892 0.78201 1.03065 1.01749 1.86459 1.21560 1.22440 1.87605 1.20149 0.90098 0.84759 0.93872 1.76440 1.26290 1.01068 1.34429 1.83415 0.92087 1.14328 1.73618 1.25917 1.05166 0.96111 1.06775 1.20848 0.92608 0.99636 1.03774 1.18110 0.78591 0.85603 0.94759 0.90552 1.86633 1.34750 1.58115 1.56438 1.21463 1.31330 1.14710 0.92010 0.92567 1.25011 0.94849 0.95635 0.97048 1.70078 1.29233 1.19507 1.30577 0.86550 0.77952 0.78771 0.84758 1.19696 1.20802 1.20764 0.88448 0.92797 0.92668 0.79918 0.81088 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.47 101.05 1.06 1.62 14 2 O -0.28 -5.71 10.04 -19.60 -0.20 -5.91 14 3 C 0.33 6.91 7.40 -18.17 -0.13 6.78 14 4 N -0.54 -10.51 11.14 28.92 0.32 -10.19 14 5 S 0.22 3.58 23.71 -107.50 -2.55 1.03 14 6 C -0.19 -3.52 10.49 29.60 0.31 -3.21 14 7 C -0.15 -3.32 4.95 -105.74 -0.52 -3.84 14 8 C 0.29 7.40 2.95 -29.03 -0.09 7.32 14 9 H 0.08 2.17 7.95 -51.93 -0.41 1.75 14 10 O -0.56 -13.95 12.44 -35.23 -0.44 -14.39 14 11 C -0.56 -15.24 8.75 -34.44 -0.30 -15.54 14 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 14 13 C 0.08 2.24 5.40 -17.82 -0.10 2.14 14 14 N -0.86 -24.93 12.84 55.43 0.71 -24.22 14 15 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 14 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 14 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 19 H 0.10 1.20 8.14 -51.93 -0.42 0.78 14 20 H 0.05 0.76 8.13 -51.93 -0.42 0.34 14 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 14 22 H 0.18 2.79 7.17 -52.49 -0.38 2.42 14 23 H 0.34 7.39 7.79 45.56 0.35 7.74 14 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 14 LS Contribution 234.80 15.07 3.54 3.54 Total: -1.00 -31.12 234.80 -4.65 -35.77 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -1.24 Total: 3.05 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 0.23 Total: -4.73 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 1.03 Total: -34.41 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.64 Total: -20.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.55 Total: 1.03 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.12 -4.65 -35.77 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712883821.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.498 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds