Wall clock time and date at job start Mon Mar 30 2020 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35955 * 116.99913 * 2 1 4 4 N 1.30345 * 121.64198 * 0.26216 * 3 2 1 5 5 S 1.69584 * 107.17271 * 180.22991 * 4 3 2 6 6 C 1.72026 * 95.78185 * 359.73037 * 5 4 3 7 7 C 1.35058 * 105.60207 * 0.02562 * 6 5 4 8 8 C 1.50696 * 122.64122 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47358 * 145.02060 * 8 7 6 10 10 O 1.42903 * 109.47131 * 25.01700 * 8 7 6 11 11 C 1.50707 * 109.47163 * 265.02503 * 8 7 6 12 12 H 1.07995 * 119.99310 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99931 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00169 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99871 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46975 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46997 * 119.99957 * 15 13 11 18 18 H 1.48498 * 109.47461 * 240.00253 * 15 13 11 19 19 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47208 * 300.00347 * 1 2 3 21 21 H 1.09005 * 109.46719 * 60.00127 * 1 2 3 22 22 H 1.07997 * 127.19875 * 179.97438 * 6 5 4 23 23 H 0.96700 * 114.00311 * 300.00591 * 10 8 7 24 24 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 7 1.3679 2.3244 0.0051 5 16 2.4908 3.5951 -0.0034 6 6 3.8881 2.5917 -0.0058 7 6 3.4243 1.3232 -0.0006 8 6 4.3370 0.1241 -0.0001 9 1 3.8890 -0.6733 0.5929 10 8 5.5989 0.4861 0.5645 11 6 4.5385 -0.3544 -1.4149 12 1 4.0538 0.1583 -2.2324 13 6 5.3417 -1.4467 -1.6653 14 7 5.9324 -2.0707 -0.6697 15 14 5.5909 -2.0402 -3.4190 16 1 4.8235 -1.1732 -4.3488 17 1 7.0344 -1.9777 -3.7622 18 1 5.1135 -3.4411 -3.5400 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 4.9202 2.9095 -0.0113 23 1 6.0555 1.1921 0.0868 24 1 6.4971 -2.8394 -0.8459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712883821.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:48 Heat of formation + Delta-G solvation = -68.730540 kcal Electronic energy + Delta-G solvation = -12464.732029 eV Core-core repulsion = 10083.662170 eV Total energy + Delta-G solvation = -2381.069859 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.20812 -38.42823 -36.72613 -34.29068 -32.21194 -29.25378 -28.49404 -25.58863 -23.56655 -20.98081 -19.27110 -18.98335 -18.32872 -17.05620 -16.70467 -16.39428 -15.88778 -15.11324 -14.61115 -14.42611 -14.01185 -13.42652 -13.01261 -12.83973 -12.81564 -12.21600 -12.14824 -12.06958 -12.00143 -11.25552 -10.79371 -10.48502 -10.26947 -9.03557 -8.12185 -6.38807 -0.20086 0.57523 0.78355 1.40199 1.41333 1.52217 1.58032 2.37840 2.41249 3.11292 3.78505 4.22024 4.31918 4.35029 4.48282 4.57783 4.65328 4.83676 5.18934 5.60849 5.69131 6.02571 6.23884 6.69016 7.31282 7.49325 8.90909 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.033168 B = 0.010877 C = 0.009624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.991584 B = 2573.527397 C = 2908.603302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.311 3.689 4 N -0.559 5.559 5 S 0.303 5.697 6 C -0.178 4.178 7 C -0.196 4.196 8 C 0.299 3.701 9 H 0.032 0.968 10 O -0.570 6.570 11 C -0.566 4.566 12 H 0.050 0.950 13 C 0.031 3.969 14 N -0.897 5.897 15 Si 0.960 3.040 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.279 1.279 19 H 0.123 0.877 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.211 0.789 23 H 0.360 0.640 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 8.541 -0.186 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.213 6.213 3 C 0.097 3.903 4 N -0.401 5.401 5 S 0.452 5.548 6 C -0.325 4.325 7 C -0.213 4.213 8 C 0.238 3.762 9 H 0.050 0.950 10 O -0.375 6.375 11 C -0.604 4.604 12 H 0.068 0.932 13 C -0.171 4.171 14 N -0.534 5.534 15 Si 0.784 3.216 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.205 1.205 19 H 0.141 0.859 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.228 0.772 23 H 0.206 0.794 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.629 9.272 0.316 12.011 hybrid contribution 1.090 -1.669 -1.130 2.291 sum -6.539 7.603 -0.814 10.061 Atomic orbital electron populations 1.23165 0.75820 1.04981 1.02250 1.86406 1.24157 1.23045 1.87733 1.20129 0.90048 0.85232 0.94921 1.76273 1.27743 1.01461 1.34580 1.83133 0.89419 1.11476 1.70787 1.26376 1.07477 0.95494 1.03104 1.20528 0.92722 0.99557 1.08453 1.17582 0.79172 0.86514 0.92909 0.94999 1.86555 1.35089 1.59036 1.56797 1.21712 1.30952 1.14835 0.92890 0.93216 1.25820 0.94566 0.95735 1.01026 1.70198 1.30215 1.20177 1.32778 0.85507 0.78120 0.78117 0.79806 1.19283 1.19927 1.20474 0.85925 0.91981 0.92343 0.77187 0.79355 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.47 113.37 1.19 2.16 14 2 O -0.31 -12.96 10.04 -93.04 -0.93 -13.89 14 3 C 0.31 13.09 7.40 84.92 0.63 13.72 14 4 N -0.56 -20.77 11.14 -176.08 -1.96 -22.73 14 5 S 0.30 9.02 23.71 -56.49 -1.34 7.68 14 6 C -0.18 -6.06 10.49 67.09 0.70 -5.35 14 7 C -0.20 -8.49 4.95 -20.59 -0.10 -8.59 14 8 C 0.30 15.61 2.95 29.10 0.09 15.70 14 9 H 0.03 1.92 7.95 -2.39 -0.02 1.91 14 10 O -0.57 -28.84 12.44 -148.98 -1.85 -30.69 14 11 C -0.57 -31.33 8.75 25.60 0.22 -31.11 14 12 H 0.05 2.75 7.74 -2.91 -0.02 2.73 14 13 C 0.03 1.74 5.40 84.65 0.46 2.20 14 14 N -0.90 -52.97 12.84 21.45 0.28 -52.69 14 15 Si 0.96 43.31 29.54 68.60 2.03 45.33 14 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 14 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 14 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 19 H 0.12 2.92 8.14 -2.39 -0.02 2.90 14 20 H 0.06 1.72 8.13 -2.39 -0.02 1.70 14 21 H 0.06 1.68 8.14 -2.38 -0.02 1.66 14 22 H 0.21 5.74 7.17 -2.91 -0.02 5.72 14 23 H 0.36 15.22 7.79 -74.06 -0.58 14.65 14 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 14 Total: -1.00 -67.18 234.80 0.05 -67.14 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.65 Total: 11.13 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 3.18 Total: -11.27 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -1.69 Total: -75.42 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.79 Total: -44.58 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 9.02 SS G_CDS: -1.34 Total: 7.68 kcal Total: -67.18 0.05 -67.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712883821.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.595 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds