Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99860 * 2 1 4 4 H 1.09005 * 109.78620 * 29.50917 * 3 2 1 5 5 C 1.54246 * 109.62866 * 269.02340 * 3 2 1 6 6 C 1.45537 * 112.40842 * 160.29943 * 5 3 2 7 7 C 1.54143 * 112.32752 * 61.93579 * 6 5 3 8 8 C 1.50467 * 108.57992 * 279.91054 * 7 6 5 9 9 O 1.42903 * 108.87714 * 333.50329 * 8 7 6 10 10 C 1.50701 * 108.87765 * 214.96640 * 8 7 6 11 11 H 1.08005 * 120.00014 * 238.56109 * 10 8 7 12 12 C 1.37878 * 120.00067 * 58.55242 * 10 8 7 13 13 N 1.31511 * 120.00027 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00041 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46971 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46923 * 120.00087 * 14 12 10 17 17 H 1.48496 * 109.47570 * 240.00408 * 14 12 10 18 18 C 1.54062 * 112.42381 * 94.23239 * 8 7 6 19 19 C 1.50468 * 109.63177 * 149.99914 * 3 2 1 20 20 H 1.08998 * 109.46887 * 60.00311 * 1 2 3 21 21 H 1.09002 * 109.46750 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47329 * 300.00031 * 1 2 3 23 23 H 1.08998 * 108.89515 * 281.05209 * 5 3 2 24 24 H 1.09002 * 108.89569 * 39.54469 * 5 3 2 25 25 H 1.08996 * 108.89917 * 182.69529 * 6 5 3 26 26 H 1.09007 * 108.89317 * 301.28176 * 6 5 3 27 27 H 1.08996 * 109.48551 * 160.24438 * 7 6 5 28 28 H 1.09003 * 109.71103 * 39.70321 * 7 6 5 29 29 H 0.96700 * 114.00311 * 301.44653 * 9 8 7 30 30 H 0.97002 * 120.00074 * 180.02562 * 13 12 10 31 31 H 1.09007 * 108.81088 * 79.19733 * 18 8 7 32 32 H 1.09000 * 108.81869 * 197.57696 * 18 8 7 33 33 H 1.09003 * 108.87638 * 93.08191 * 19 3 2 34 34 H 1.08999 * 108.79791 * 334.58640 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0056 0.5052 5 6 2.2436 1.7688 -1.4526 6 6 2.3919 3.2128 -1.5574 7 6 3.6122 3.7345 -0.7734 8 6 3.2411 3.8329 0.6814 9 8 1.8289 4.0246 0.7865 10 6 3.9402 5.0245 1.2835 11 1 4.6090 4.8919 2.1211 12 6 3.7263 6.2839 0.7648 13 7 2.9117 6.4455 -0.2549 14 14 4.5934 7.7609 1.5106 15 1 5.4498 7.3145 2.6387 16 1 5.4371 8.4133 0.4773 17 1 3.5832 8.7288 2.0084 18 6 3.6333 2.5716 1.4745 19 6 3.3371 1.2681 0.7086 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.1468 1.2926 -1.8342 24 1 1.3968 1.4557 -2.0634 25 1 2.5052 3.4807 -2.6078 26 1 1.4924 3.6892 -1.1671 27 1 3.8907 4.7196 -1.1477 28 1 4.4478 3.0448 -0.8924 29 1 1.5040 4.8132 0.3309 30 1 2.7615 7.3315 -0.6201 31 1 4.6995 2.6139 1.6974 32 1 3.0789 2.5599 2.4129 33 1 4.1250 1.1042 -0.0265 34 1 3.3352 0.4372 1.4141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718749496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -108.495791 kcal Electronic energy + Delta-G solvation = -15782.154945 eV Core-core repulsion = 13293.699965 eV Total energy + Delta-G solvation = -2488.454980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02449 -36.77553 -33.59385 -32.06261 -31.59683 -29.26198 -26.31782 -25.39886 -23.44638 -22.29522 -19.67552 -18.23621 -17.11086 -15.91969 -15.38197 -14.87028 -14.56801 -14.37276 -13.75331 -13.28048 -12.95189 -12.55362 -12.15730 -11.72544 -11.47735 -11.32509 -11.05817 -10.81766 -10.58187 -10.37989 -10.30483 -9.92266 -9.85814 -9.76098 -9.46634 -8.91660 -8.84803 -8.45569 -7.93530 -6.12752 -4.24522 3.22801 3.31758 3.36013 4.28584 4.33995 5.11293 5.40748 5.51090 5.67352 5.71399 5.89600 5.91964 6.07861 6.12891 6.21392 6.25800 6.46579 6.57483 6.60281 6.82291 6.83252 6.93986 6.97960 7.03952 7.21599 7.46140 7.68559 7.73975 7.84769 8.03678 8.27601 8.79688 9.43305 9.60093 10.88685 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.053869 B = 0.009387 C = 0.008986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.655903 B = 2982.256779 C = 3115.130234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.398 6.398 3 C 0.083 3.917 4 H 0.095 0.905 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.124 4.124 8 C 0.249 3.751 9 O -0.592 6.592 10 C -0.534 4.534 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.093 4.093 19 C -0.112 4.112 20 H 0.036 0.964 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.378 0.622 30 H 0.265 0.735 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -6.691 -1.331 7.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.317 6.317 3 C 0.027 3.973 4 H 0.113 0.887 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.162 4.162 8 C 0.209 3.791 9 O -0.403 6.403 10 C -0.572 4.572 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.131 4.131 19 C -0.150 4.150 20 H 0.055 0.945 21 H 0.093 0.907 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.230 0.770 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.292 -7.265 -1.093 7.695 hybrid contribution 0.306 1.628 -0.091 1.659 sum -1.986 -5.636 -1.184 6.092 Atomic orbital electron populations 1.22654 0.82225 1.01380 0.99918 1.87823 1.18851 1.29926 1.95143 1.22161 0.96132 0.83237 0.95796 0.88733 1.20865 1.00454 0.97988 0.96564 1.20288 1.02001 0.94109 0.98794 1.21938 0.95025 1.01482 0.97803 1.18368 0.79397 0.90650 0.90637 1.86094 1.24853 1.49791 1.79533 1.21962 1.26839 0.92318 1.16081 0.92438 1.24981 0.95043 0.99009 0.94465 1.69653 1.36858 1.23144 1.24005 0.86474 0.79443 0.82455 0.79207 1.19822 1.21000 1.20966 1.21865 1.00167 0.92603 0.98481 1.21424 0.95692 0.98531 0.99323 0.94505 0.90699 0.94238 0.93220 0.93731 0.94431 0.90784 0.89160 0.94963 0.76987 0.92525 0.91983 0.92842 0.92530 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.80 101.05 1.09 1.60 16 2 O -0.40 -7.19 10.24 -35.23 -0.36 -7.55 16 3 C 0.08 1.60 2.28 -27.34 -0.06 1.54 16 4 H 0.09 1.99 5.36 -51.93 -0.28 1.71 16 5 C -0.12 -2.27 4.92 -29.60 -0.15 -2.42 16 6 C -0.11 -2.36 5.17 -29.65 -0.15 -2.51 16 7 C -0.12 -2.86 4.59 -27.40 -0.13 -2.99 16 8 C 0.25 5.98 0.65 -92.48 -0.06 5.92 16 9 O -0.59 -14.57 8.96 -35.23 -0.32 -14.89 16 10 C -0.53 -14.17 8.08 -34.44 -0.28 -14.44 16 11 H 0.06 1.54 7.68 -52.48 -0.40 1.13 16 12 C 0.07 1.72 4.92 -17.82 -0.09 1.63 16 13 N -0.90 -23.41 9.81 55.43 0.54 -22.87 16 14 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.09 -2.01 4.90 -25.62 -0.13 -2.13 16 19 C -0.11 -2.16 5.07 -27.44 -0.14 -2.30 16 20 H 0.04 0.51 7.82 -51.93 -0.41 0.10 16 21 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 23 H 0.05 0.91 7.47 -51.93 -0.39 0.52 16 24 H 0.04 0.78 7.78 -51.93 -0.40 0.37 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.62 5.73 -51.92 -0.30 1.32 16 27 H 0.09 2.32 5.77 -51.93 -0.30 2.02 16 28 H 0.03 0.71 6.97 -51.93 -0.36 0.34 16 29 H 0.38 9.67 6.20 45.56 0.28 9.96 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.06 1.29 7.92 -51.92 -0.41 0.88 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.06 6.63 -51.93 -0.34 0.71 16 34 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 LS Contribution 255.38 15.07 3.85 3.85 Total: -1.00 -26.53 255.38 -5.94 -32.47 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.55 Total: 9.49 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.09 Total: -16.10 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.54 Total: -22.87 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.68 Total: -22.44 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.53 -5.94 -32.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718749496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.026 kcal (2) G-P(sol) polarization free energy of solvation -26.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds