Wall clock time and date at job start Mon Mar 30 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99805 * 2 1 4 4 H 1.09003 * 109.78390 * 329.51492 * 3 2 1 5 5 C 1.50477 * 109.62677 * 90.00275 * 3 2 1 6 6 C 1.54057 * 112.49606 * 213.86285 * 5 3 2 7 7 C 1.54074 * 112.81726 * 318.28029 * 6 5 3 8 8 C 1.50466 * 112.49426 * 318.28585 * 7 6 5 9 9 O 1.42900 * 109.63321 * 334.43907 * 8 7 6 10 10 C 1.50704 * 109.79009 * 213.95393 * 8 7 6 11 11 H 1.07994 * 120.00322 * 240.87756 * 10 8 7 12 12 C 1.37875 * 119.99873 * 60.87221 * 10 8 7 13 13 N 1.31526 * 119.99918 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00182 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46943 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47085 * 120.00081 * 14 12 10 17 17 H 1.48497 * 109.47177 * 240.00229 * 14 12 10 18 18 C 1.54246 * 108.52212 * 94.15055 * 8 7 6 19 19 C 1.45538 * 112.40665 * 280.00962 * 18 8 7 20 20 H 1.09008 * 109.47043 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47386 * 299.99834 * 1 2 3 22 22 H 1.09006 * 109.47383 * 60.00096 * 1 2 3 23 23 H 1.08993 * 108.87669 * 93.07806 * 5 3 2 24 24 H 1.09006 * 108.79526 * 334.58432 * 5 3 2 25 25 H 1.09000 * 108.81412 * 197.42158 * 6 5 3 26 26 H 1.09000 * 108.73514 * 79.08260 * 6 5 3 27 27 H 1.09001 * 108.87570 * 197.50588 * 7 6 5 28 28 H 1.08997 * 108.79278 * 79.01126 * 7 6 5 29 29 H 0.96693 * 113.99730 * 299.03530 * 9 8 7 30 30 H 0.97000 * 119.99743 * 179.97438 * 13 12 10 31 31 H 1.09000 * 108.89299 * 40.76867 * 18 8 7 32 32 H 1.08998 * 108.89527 * 159.25393 * 18 8 7 33 33 H 1.08998 * 108.89422 * 182.68921 * 19 18 8 34 34 H 1.09000 * 108.89571 * 301.18340 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3527 2.0021 -0.5203 5 6 2.2158 1.7673 1.4173 6 6 2.0245 3.2877 1.5756 7 6 2.6578 4.0926 0.4245 8 6 4.0074 3.5609 0.0247 9 8 4.6021 2.8797 1.1312 10 6 4.8967 4.6987 -0.4065 11 1 5.2907 4.7251 -1.4117 12 6 5.2072 5.7059 0.4823 13 7 4.7277 5.6735 1.7066 14 14 6.3089 7.1166 -0.0522 15 1 6.7130 6.9201 -1.4676 16 1 5.5702 8.3982 0.0778 17 1 7.5188 7.1531 0.8079 18 6 3.8188 2.5775 -1.1485 19 6 3.3813 1.2622 -0.7050 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 3.2260 1.5043 1.7308 24 1 1.5021 1.2531 2.0612 25 1 2.4774 3.6030 2.5156 26 1 0.9569 3.5045 1.6103 27 1 2.7664 5.1308 0.7382 28 1 1.9933 4.0531 -0.4386 29 1 4.7493 3.4404 1.9051 30 1 4.9465 6.3820 2.3321 31 1 3.0753 2.9843 -1.8340 32 1 4.7657 2.4744 -1.6785 33 1 3.3128 0.6027 -1.5701 34 1 4.1211 0.8587 -0.0136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718749509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:29 Heat of formation + Delta-G solvation = -109.372726 kcal Electronic energy + Delta-G solvation = -15746.691776 eV Core-core repulsion = 13258.198769 eV Total energy + Delta-G solvation = -2488.493007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.01728 -36.81340 -33.34982 -32.00074 -31.63469 -29.46121 -26.45649 -25.43812 -23.17965 -22.51842 -19.45550 -18.50029 -16.99783 -16.07675 -15.23874 -15.07641 -14.56302 -14.07194 -13.72057 -13.25404 -13.15445 -12.58192 -12.04068 -11.85944 -11.52997 -11.23467 -11.12248 -10.69406 -10.58518 -10.48093 -10.22564 -9.99044 -9.91604 -9.76338 -9.46966 -8.96049 -8.75441 -8.50732 -7.87281 -6.13473 -4.24291 3.23147 3.32142 3.36377 4.19287 4.34257 5.11665 5.38610 5.50790 5.62496 5.63539 5.81460 5.90051 6.04285 6.13286 6.19505 6.24478 6.35610 6.51221 6.63515 6.70156 6.92003 6.97012 7.09881 7.15843 7.26237 7.41031 7.67629 7.71681 7.82636 7.98150 8.28044 8.80458 9.44588 9.64922 10.89402 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.059440 B = 0.009140 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.951979 B = 3062.836529 C = 3249.881983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.096 3.904 4 H 0.053 0.947 5 C -0.139 4.139 6 C -0.096 4.096 7 C -0.129 4.129 8 C 0.257 3.743 9 O -0.585 6.585 10 C -0.532 4.532 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.100 4.100 19 C -0.099 4.099 20 H 0.077 0.923 21 H 0.037 0.963 22 H 0.035 0.965 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.377 0.623 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -5.243 -1.378 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.039 3.961 4 H 0.071 0.929 5 C -0.177 4.177 6 C -0.133 4.133 7 C -0.167 4.167 8 C 0.218 3.782 9 O -0.394 6.394 10 C -0.570 4.570 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.536 5.536 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.137 4.137 19 C -0.137 4.137 20 H 0.096 0.904 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.228 0.772 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.040 -5.807 -1.638 8.537 hybrid contribution 0.278 1.675 0.156 1.705 sum -5.762 -4.132 -1.481 7.243 Atomic orbital electron populations 1.22666 0.82348 1.01669 0.99627 1.87866 1.18605 1.29561 1.95203 1.21927 0.94806 0.82515 0.96810 0.92865 1.21967 1.03759 0.96366 0.95573 1.21618 0.97547 0.93571 1.00603 1.22011 0.97213 1.02183 0.95319 1.18264 0.88946 0.87739 0.83300 1.86085 1.84507 1.41861 1.26924 1.21882 1.29902 1.06563 0.98697 0.92329 1.24997 0.95572 0.97863 0.94994 1.69665 1.44766 1.34438 1.04728 0.86476 0.80436 0.81841 0.78843 1.19798 1.21033 1.20921 1.20441 1.00045 0.94704 0.98524 1.20361 0.95092 0.98542 0.99696 0.90443 0.94444 0.94598 0.88842 0.94163 0.92196 0.95271 0.89838 0.95499 0.77224 0.92530 0.93270 0.92402 0.93539 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.75 101.05 1.09 1.54 16 2 O -0.39 -6.95 10.26 -35.23 -0.36 -7.31 16 3 C 0.10 1.80 2.28 -27.34 -0.06 1.74 16 4 H 0.05 0.99 6.64 -51.93 -0.34 0.65 16 5 C -0.14 -2.69 5.01 -27.44 -0.14 -2.83 16 6 C -0.10 -1.95 5.34 -25.62 -0.14 -2.09 16 7 C -0.13 -2.96 4.43 -27.44 -0.12 -3.08 16 8 C 0.26 6.20 0.67 -92.38 -0.06 6.13 16 9 O -0.58 -14.47 8.58 -35.23 -0.30 -14.77 16 10 C -0.53 -14.16 8.13 -34.44 -0.28 -14.44 16 11 H 0.06 1.57 7.70 -52.49 -0.40 1.16 16 12 C 0.07 1.75 4.95 -17.82 -0.09 1.66 16 13 N -0.90 -23.53 10.05 55.43 0.56 -22.97 16 14 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.10 -2.14 4.53 -29.60 -0.13 -2.27 16 19 C -0.10 -1.96 4.85 -29.60 -0.14 -2.10 16 20 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 21 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 22 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 23 H 0.09 1.98 5.32 -51.93 -0.28 1.70 16 24 H 0.04 0.72 7.62 -51.93 -0.40 0.32 16 25 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 2.13 6.01 -51.93 -0.31 1.82 16 28 H 0.03 0.58 6.63 -51.93 -0.34 0.23 16 29 H 0.38 9.74 6.95 45.56 0.32 10.06 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 32 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 LS Contribution 256.43 15.07 3.86 3.86 Total: -1.00 -26.63 256.43 -5.90 -32.53 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.56 Total: 8.76 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.08 Total: -15.73 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.56 Total: -22.97 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.66 Total: -22.08 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.63 -5.90 -32.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718749509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.840 kcal (2) G-P(sol) polarization free energy of solvation -26.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds