Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09005 * 108.85215 * 28.55832 * 3 2 1 5 5 C 1.54066 * 108.87858 * 269.99546 * 3 2 1 6 6 C 1.54055 * 112.82215 * 197.50370 * 5 3 2 7 7 C 1.50472 * 112.50089 * 318.28511 * 6 5 3 8 8 C 1.54240 * 108.51560 * 94.14902 * 7 6 5 9 9 O 1.42898 * 108.89537 * 40.76464 * 8 7 6 10 10 C 1.50700 * 108.89420 * 159.25382 * 8 7 6 11 11 H 1.07999 * 119.99881 * 120.00232 * 10 8 7 12 12 C 1.37872 * 120.00260 * 300.00261 * 10 8 7 13 13 N 1.31514 * 119.99751 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00252 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47171 * 59.99588 * 14 12 10 16 16 H 1.48498 * 109.47360 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46760 * 300.00028 * 14 12 10 18 18 C 1.45546 * 112.41052 * 280.00935 * 8 7 6 19 19 C 1.50477 * 108.87739 * 147.02176 * 3 2 1 20 20 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 21 21 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 23 23 H 1.09007 * 108.80982 * 318.37133 * 5 3 2 24 24 H 1.09007 * 108.81305 * 76.75158 * 5 3 2 25 25 H 1.09006 * 108.87685 * 79.06559 * 6 5 3 26 26 H 1.08997 * 108.87880 * 197.60729 * 6 5 3 27 27 H 1.08997 * 109.63169 * 213.85854 * 7 6 5 28 28 H 1.08996 * 109.62616 * 334.24988 * 7 6 5 29 29 H 0.96705 * 113.99958 * 59.99959 * 9 8 7 30 30 H 0.97003 * 119.99454 * 179.97438 * 13 12 10 31 31 H 1.08996 * 108.89578 * 182.68727 * 18 8 7 32 32 H 1.09000 * 108.89338 * 301.28208 * 18 8 7 33 33 H 1.09002 * 109.62925 * 334.63297 * 19 3 2 34 34 H 1.08996 * 109.62667 * 95.21436 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3258 1.9957 0.4931 5 6 2.2131 1.7608 -1.4578 6 6 3.2031 2.9343 -1.5850 7 6 3.0066 3.9721 -0.5133 8 6 3.9685 3.6614 0.6517 9 8 5.2305 3.2595 0.1152 10 6 4.1646 4.9120 1.4694 11 1 3.8922 4.9222 2.5144 12 6 4.6920 6.0431 0.8834 13 7 5.0242 6.0306 -0.3890 14 14 4.9345 7.5936 1.8968 15 1 5.8590 7.3089 3.0236 16 1 5.5127 8.6597 1.0399 17 1 3.6250 8.0444 2.4328 18 6 3.4670 2.6053 1.5186 19 6 3.2994 1.2644 0.7750 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 2.5888 0.9192 -2.0398 24 1 1.2508 2.0688 -1.8670 25 1 4.2198 2.5468 -1.5185 26 1 3.0686 3.4052 -2.5587 27 1 3.2268 4.9607 -0.9162 28 1 1.9762 3.9422 -0.1592 29 1 5.6532 3.9292 -0.4398 30 1 5.3949 6.8265 -0.8013 31 1 4.1642 2.4660 2.3448 32 1 2.5000 2.9079 1.9204 33 1 3.2674 0.4475 1.4960 34 1 4.1342 1.1190 0.0895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718749512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = -111.511661 kcal Electronic energy + Delta-G solvation = -15632.109745 eV Core-core repulsion = 13143.523986 eV Total energy + Delta-G solvation = -2488.585758 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.03582 -36.99579 -33.56354 -32.03462 -31.37257 -29.35582 -26.38161 -25.59927 -23.50594 -22.58213 -19.18458 -18.56195 -17.01720 -16.14968 -15.31875 -15.08030 -14.80581 -14.26375 -13.64615 -13.16594 -13.00998 -12.59893 -12.10154 -11.87439 -11.52813 -11.21045 -11.03153 -10.85438 -10.73559 -10.54067 -10.38667 -10.05435 -9.89954 -9.67257 -9.43154 -9.05560 -8.94978 -8.47082 -7.92845 -6.12113 -4.24147 3.25714 3.30720 3.33807 4.15093 4.34335 5.11381 5.29110 5.40607 5.56162 5.57967 5.75688 5.82706 5.97545 6.11549 6.15743 6.21421 6.32916 6.45180 6.59573 6.63457 6.81180 6.88114 7.00881 7.16655 7.31491 7.45769 7.62953 7.67376 7.79861 8.10158 8.25424 8.78698 9.44044 9.65339 10.89658 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.051395 B = 0.008909 C = 0.008586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.665591 B = 3142.278280 C = 3260.360016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.095 3.905 4 H 0.055 0.945 5 C -0.130 4.130 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.247 3.753 9 O -0.589 6.589 10 C -0.537 4.537 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.897 5.897 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.086 4.086 19 C -0.114 4.114 20 H 0.037 0.963 21 H 0.077 0.923 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.032 0.968 29 H 0.379 0.621 30 H 0.266 0.734 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 -6.046 -0.989 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C 0.038 3.962 4 H 0.073 0.927 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.173 4.173 8 C 0.207 3.793 9 O -0.398 6.398 10 C -0.575 4.575 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.124 4.124 19 C -0.152 4.152 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.952 -6.632 -0.792 8.946 hybrid contribution -0.129 1.760 0.132 1.770 sum -6.080 -4.872 -0.661 7.819 Atomic orbital electron populations 1.22693 0.82349 1.01768 0.99656 1.87922 1.18695 1.29635 1.95161 1.22133 0.95502 0.82735 0.95782 0.92734 1.22364 0.99453 0.98947 0.96049 1.21301 1.00204 0.95206 0.98697 1.21925 0.97978 1.00482 0.96961 1.17363 0.81921 0.90602 0.89366 1.86138 1.36466 1.46765 1.70460 1.21905 1.41838 0.96908 0.96872 0.92519 1.24981 0.94691 0.98697 0.94898 1.69560 1.43680 1.29999 1.10586 0.86594 0.78485 0.82370 0.80159 1.20192 1.21190 1.20307 1.20396 1.00094 0.93357 0.98524 1.21426 0.96229 0.98298 0.99217 0.94408 0.90428 0.94515 0.92443 0.93731 0.90252 0.94143 0.88796 0.94958 0.77021 0.92350 0.92389 0.92742 0.92263 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.79 101.05 1.09 1.51 16 2 O -0.39 -6.74 10.18 -35.23 -0.36 -7.09 16 3 C 0.10 1.72 2.12 -27.43 -0.06 1.67 16 4 H 0.05 0.99 6.21 -51.93 -0.32 0.67 16 5 C -0.13 -2.34 5.45 -25.62 -0.14 -2.48 16 6 C -0.12 -2.37 5.24 -27.44 -0.14 -2.52 16 7 C -0.14 -3.11 4.62 -27.34 -0.13 -3.24 16 8 C 0.25 6.00 0.58 -94.64 -0.05 5.95 16 9 O -0.59 -14.94 9.97 -35.23 -0.35 -15.29 16 10 C -0.54 -14.36 8.12 -34.44 -0.28 -14.64 16 11 H 0.06 1.51 7.72 -52.49 -0.40 1.11 16 12 C 0.07 1.80 5.06 -17.82 -0.09 1.71 16 13 N -0.90 -23.73 9.59 55.43 0.53 -23.20 16 14 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.09 -1.87 4.05 -29.60 -0.12 -1.99 16 19 C -0.11 -2.23 5.28 -27.34 -0.14 -2.37 16 20 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 24 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.08 1.73 5.47 -51.93 -0.28 1.44 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.09 2.41 5.81 -51.93 -0.30 2.11 16 28 H 0.03 0.71 6.99 -51.93 -0.36 0.35 16 29 H 0.38 9.96 6.92 45.56 0.32 10.28 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.05 1.13 7.46 -51.93 -0.39 0.75 16 33 H 0.06 1.08 7.98 -51.93 -0.41 0.67 16 34 H 0.08 1.67 6.25 -51.93 -0.32 1.34 16 LS Contribution 257.93 15.07 3.89 3.89 Total: -1.00 -26.86 257.93 -5.95 -32.81 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.58 Total: 9.61 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.07 Total: -16.41 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.53 Total: -23.20 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.71 Total: -22.38 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.86 -5.95 -32.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718749512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.700 kcal (2) G-P(sol) polarization free energy of solvation -26.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds