Wall clock time and date at job start Mon Mar 30 2020 02:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46947 * 2 1 4 4 O 1.42894 * 109.47168 * 239.99616 * 2 1 3 5 5 C 1.42905 * 113.99888 * 90.00152 * 4 2 1 6 6 C 1.53005 * 109.46891 * 180.02562 * 5 4 2 7 7 O 1.42894 * 109.47005 * 64.99600 * 6 5 4 8 8 C 1.42908 * 113.99754 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46954 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00587 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99655 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00475 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99949 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46877 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47094 * 119.99542 * 13 11 9 16 16 H 1.48495 * 109.47038 * 239.99880 * 13 11 9 17 17 C 1.53001 * 109.47250 * 119.99349 * 2 1 3 18 18 C 1.53000 * 117.50223 * 185.00332 * 17 2 1 19 19 C 1.52997 * 117.49889 * 116.37594 * 17 2 1 20 20 H 1.09003 * 109.47066 * 300.00391 * 1 2 3 21 21 H 1.08997 * 109.46725 * 60.00450 * 1 2 3 22 22 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46898 * 299.99246 * 5 4 2 24 24 H 1.09001 * 109.46970 * 59.99972 * 5 4 2 25 25 H 1.08995 * 109.46859 * 185.00397 * 6 5 4 26 26 H 1.09005 * 109.47018 * 304.99596 * 6 5 4 27 27 H 1.09003 * 109.46891 * 300.00258 * 8 7 6 28 28 H 1.08997 * 109.46942 * 60.00269 * 8 7 6 29 29 H 0.96998 * 120.00727 * 180.02562 * 12 11 9 30 30 H 1.09002 * 115.55911 * 330.69022 * 17 2 1 31 31 H 1.08990 * 117.49990 * 145.01974 * 18 17 2 32 32 H 1.09004 * 117.49237 * 359.97438 * 18 17 2 33 33 H 1.08999 * 117.49685 * 0.02562 * 19 17 2 34 34 H 1.08999 * 117.52022 * 214.97106 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7080 -0.6410 -3.4791 7 8 1.6997 -1.5709 -3.8796 8 6 2.0746 -2.3940 -4.9861 9 6 0.9428 -3.3307 -5.3216 10 1 0.0287 -3.3009 -4.7472 11 6 1.0746 -4.2266 -6.3613 12 7 2.1878 -4.2634 -7.0606 13 14 -0.3281 -5.3883 -6.7768 14 1 -1.4611 -5.1486 -5.8471 15 1 -0.7733 -5.1474 -8.1729 16 1 0.1352 -6.7925 -6.6402 17 6 2.0401 -0.7211 1.2493 18 6 3.5502 -0.7263 1.4951 19 6 2.8440 -2.0066 1.0443 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.2538 0.6545 -2.5589 24 1 2.9320 0.9513 -2.0450 25 1 2.9402 0.0240 -4.3109 26 1 3.6068 -1.1835 -3.1859 27 1 2.2933 -1.7651 -5.8491 28 1 2.9604 -2.9729 -4.7245 29 1 2.2804 -4.8934 -7.7923 30 1 1.3884 -0.6687 2.1215 31 1 3.8920 -0.6774 2.5288 32 1 4.1803 -0.2163 0.7664 33 1 3.0099 -2.3383 0.0193 34 1 2.7217 -2.8001 1.7815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719023102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:00 Heat of formation + Delta-G solvation = -81.059067 kcal Electronic energy + Delta-G solvation = -14332.697513 eV Core-core repulsion = 11845.432279 eV Total energy + Delta-G solvation = -2487.265235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.84197 -36.81265 -35.62046 -32.70684 -31.13999 -29.12008 -26.75633 -23.80587 -22.48094 -22.24253 -21.71888 -20.22342 -16.60989 -16.38746 -16.04394 -15.56792 -14.97127 -14.50280 -14.37507 -13.86560 -13.40287 -12.79235 -12.53889 -12.15072 -11.97639 -11.51542 -11.40866 -11.24009 -10.93804 -10.77622 -10.74801 -10.51848 -10.23709 -9.99637 -9.89542 -9.26645 -9.03951 -8.79445 -8.13035 -6.07400 -4.08479 3.31880 3.38062 3.45206 3.69271 4.06539 4.38208 4.69903 4.88148 4.99053 5.02702 5.24880 5.29162 5.32115 5.48631 5.57142 5.64971 5.68015 5.70723 5.91693 6.01774 6.05404 6.09528 6.20000 6.27624 6.34491 6.47530 7.13579 7.46746 7.53428 7.84116 8.19530 8.62687 9.05682 9.56246 11.04369 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038455 B = 0.005768 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.948720 B = 4853.130927 C = 4964.930070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 H 0.057 0.943 4 O -0.364 6.364 5 C 0.068 3.932 6 C 0.064 3.936 7 O -0.388 6.388 8 C 0.194 3.806 9 C -0.511 4.511 10 H 0.067 0.933 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.907 3.093 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.159 4.159 18 C -0.181 4.181 19 C -0.161 4.161 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.004 0.996 28 H 0.005 0.995 29 H 0.263 0.737 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 9.188 14.230 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.055 3.945 3 H 0.075 0.925 4 O -0.283 6.283 5 C -0.009 4.009 6 C -0.014 4.014 7 O -0.307 6.307 8 C 0.119 3.881 9 C -0.550 4.550 10 H 0.085 0.915 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.734 3.266 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.177 4.177 18 C -0.218 4.218 19 C -0.198 4.198 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.934 8.876 14.159 16.738 hybrid contribution -0.390 -0.312 -0.476 0.690 sum 0.544 8.564 13.683 16.151 Atomic orbital electron populations 1.22225 0.95733 1.03180 1.01590 1.21443 0.93504 0.94561 0.84995 0.92509 1.88068 1.86237 1.34716 1.19279 1.22598 0.99609 0.92448 0.86238 1.22246 0.92594 0.92708 0.93812 1.87921 1.39056 1.50832 1.52930 1.20211 0.96460 0.88642 0.82747 1.21103 1.01195 1.17523 1.15135 0.91493 1.24950 0.96400 0.97409 0.95796 1.69971 1.25698 1.37320 1.20953 0.86289 0.81875 0.80230 0.78159 1.19468 1.20870 1.20836 1.22428 0.93944 1.03072 0.98300 1.22919 0.94281 1.02973 1.01638 1.22884 1.02658 0.90608 1.03657 0.92235 0.92272 0.91409 0.92862 0.93043 0.93155 0.93788 0.97827 0.97677 0.92754 0.87233 0.89234 0.89000 0.87036 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.49 37.16 0.35 -1.76 16 2 C 0.11 1.49 3.07 -26.73 -0.08 1.41 16 3 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 4 O -0.36 -6.17 8.31 -40.09 -0.33 -6.50 16 5 C 0.07 1.08 6.13 37.16 0.23 1.30 16 6 C 0.06 1.25 6.32 37.16 0.23 1.48 16 7 O -0.39 -9.84 10.29 -40.09 -0.41 -10.25 16 8 C 0.19 5.50 5.69 36.00 0.20 5.70 16 9 C -0.51 -15.51 9.43 -34.44 -0.32 -15.84 16 10 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 13 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.16 -1.90 5.74 -90.62 -0.52 -2.42 16 18 C -0.18 -2.02 10.24 -26.73 -0.27 -2.29 16 19 C -0.16 -2.09 9.87 -26.73 -0.26 -2.36 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 24 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.11 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 1.76 7.02 -51.93 -0.36 1.40 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 290.28 15.07 4.37 4.37 Total: -1.00 -32.25 290.28 -6.97 -39.22 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -5.78 Total: -4.16 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.54 Total: -13.24 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.75 Total: -16.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.25 -6.97 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719023102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.836 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds