Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.42900 * 114.00094 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47002 * 29.99905 * 4 3 2 6 6 C 1.52999 * 109.47616 * 270.00173 * 4 3 2 7 7 C 1.52997 * 109.47317 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 4 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 10 10 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 11 11 O 1.42905 * 109.47086 * 300.00656 * 9 8 7 12 12 C 1.34925 * 116.99641 * 269.99497 * 11 9 8 13 13 H 1.08001 * 120.00245 * 0.02562 * 12 11 9 14 14 C 1.38634 * 120.00023 * 179.97438 * 12 11 9 15 15 N 1.31588 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00438 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47240 * 89.99590 * 16 14 12 18 18 H 1.48496 * 109.47596 * 210.00298 * 16 14 12 19 19 H 1.48510 * 109.46924 * 330.00432 * 16 14 12 20 20 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 21 21 H 1.08996 * 109.47790 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47138 * 300.00950 * 1 2 3 23 23 H 1.09005 * 109.46876 * 59.99931 * 1 2 3 24 24 H 1.08998 * 109.47138 * 239.99050 * 2 1 3 25 25 H 1.09005 * 109.46876 * 120.00069 * 2 1 3 26 26 H 1.08996 * 109.46929 * 59.99102 * 6 4 3 27 27 H 1.09002 * 109.46716 * 299.99907 * 6 4 3 28 28 H 1.09002 * 109.47153 * 299.99641 * 7 6 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99792 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47153 * 60.00231 * 20 9 8 34 34 H 1.09001 * 109.47289 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6013 -0.5129 6 6 3.9388 1.5004 1.4432 7 6 5.4641 1.6205 1.4438 8 6 5.8747 2.9057 0.7223 9 6 5.3669 2.8652 -0.7204 10 1 5.6598 3.7806 -1.2345 11 8 5.9336 1.7392 -1.3935 12 6 7.1080 1.9327 -2.0289 13 1 7.5768 2.9055 -2.0129 14 6 7.7136 0.8825 -2.7014 15 7 7.1427 -0.3029 -2.7205 16 14 9.3399 1.1501 -3.5806 17 1 10.4596 0.8706 -2.6461 18 1 9.4285 0.2354 -4.7470 19 1 9.4244 2.5574 -4.0474 20 6 3.8417 2.7452 -0.7209 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.6466 0.5847 1.9571 27 1 3.5062 2.3590 1.9568 28 1 5.8964 0.7616 0.9304 29 1 5.8258 1.6497 2.4716 30 1 5.4425 3.7645 1.2357 31 1 6.9614 2.9910 0.7223 32 1 7.5661 -1.0377 -3.1914 33 1 3.4094 3.6041 -0.2076 34 1 3.4798 2.7159 -1.7487 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721580519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = -125.563014 kcal Electronic energy + Delta-G solvation = -15063.373671 eV Core-core repulsion = 12574.178600 eV Total energy + Delta-G solvation = -2489.195071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40030 -38.47013 -36.20203 -33.70612 -32.41198 -30.97751 -29.81202 -26.65395 -23.89508 -23.38308 -22.94593 -20.71131 -19.46158 -17.76040 -17.13517 -16.67352 -16.34429 -15.84309 -15.48868 -15.07844 -14.57245 -14.32663 -13.82332 -13.61036 -13.15998 -13.08011 -13.02317 -12.78616 -12.61414 -12.48138 -12.09110 -11.99157 -11.84261 -11.63830 -11.43015 -11.12496 -10.85623 -10.33264 -10.03942 -8.13439 -5.80064 1.39670 1.45281 1.54140 2.34685 2.71312 3.20008 3.65442 3.84531 4.08145 4.13038 4.15241 4.30263 4.36600 4.41599 4.48099 4.52486 4.62759 4.66911 4.74791 4.88911 5.01036 5.02473 5.06578 5.12806 5.21266 5.26959 5.33410 5.34646 5.44441 5.60194 6.25170 6.33465 7.30621 8.13417 9.11179 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036648 B = 0.008140 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.833867 B = 3438.804267 C = 3832.628707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.099 3.901 5 H 0.033 0.967 6 C -0.122 4.122 7 C -0.105 4.105 8 C -0.131 4.131 9 C 0.084 3.916 10 H 0.042 0.958 11 O -0.317 6.317 12 C -0.366 4.366 13 H 0.069 0.931 14 C -0.043 4.043 15 N -0.939 5.939 16 Si 0.998 3.002 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.099 4.099 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.257 0.743 33 H 0.098 0.902 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 3.806 7.670 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 O -0.318 6.318 4 C 0.042 3.958 5 H 0.051 0.949 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.169 4.169 9 C 0.025 3.975 10 H 0.060 0.940 11 O -0.233 6.233 12 C -0.445 4.445 13 H 0.087 0.913 14 C -0.236 4.236 15 N -0.585 5.585 16 Si 0.821 3.179 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.185 1.185 20 C -0.137 4.137 21 H 0.108 0.892 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.171 3.653 7.611 11.749 hybrid contribution 1.152 -0.263 -0.711 1.379 sum -7.019 3.390 6.901 10.411 Atomic orbital electron populations 1.21723 0.91617 1.03436 1.02999 1.22666 0.97042 0.83417 0.99827 1.87792 1.21274 1.27458 1.95253 1.21874 0.79924 0.97914 0.96100 0.94864 1.21877 0.95531 1.02785 0.95744 1.21278 0.95234 0.97730 1.00033 1.21982 1.00417 0.98626 0.95849 1.22063 0.92417 0.89917 0.93063 0.93978 1.85639 1.36745 1.33031 1.67903 1.21330 0.97660 0.96608 1.28940 0.91317 1.26086 1.02958 0.94673 0.99849 1.70193 1.40898 1.01836 1.45531 0.84852 0.77115 0.78321 0.77583 1.19783 1.20738 1.18481 1.21588 0.94055 0.97898 1.00145 0.89190 0.91269 0.92330 0.94943 0.92933 0.91693 0.89689 0.94811 0.90136 0.89255 0.93261 0.93416 0.88378 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 10.28 71.98 0.74 -2.35 16 2 C 0.05 1.40 6.47 71.98 0.47 1.86 16 3 O -0.40 -13.93 9.99 -148.98 -1.49 -15.42 16 4 C 0.10 3.82 2.46 30.60 0.08 3.89 16 5 H 0.03 1.57 7.33 -2.39 -0.02 1.55 16 6 C -0.12 -3.96 5.54 30.59 0.17 -3.79 16 7 C -0.11 -3.78 5.78 30.59 0.18 -3.60 16 8 C -0.13 -4.82 5.63 30.60 0.17 -4.64 16 9 C 0.08 3.67 2.96 30.59 0.09 3.76 16 10 H 0.04 1.81 7.80 -2.39 -0.02 1.79 16 11 O -0.32 -18.10 8.08 -81.94 -0.66 -18.76 16 12 C -0.37 -21.53 9.77 67.91 0.66 -20.87 16 13 H 0.07 3.79 7.64 -2.91 -0.02 3.76 16 14 C -0.04 -2.54 5.49 84.82 0.47 -2.08 16 15 N -0.94 -60.07 13.68 21.61 0.30 -59.77 16 16 Si 1.00 45.61 29.55 68.60 2.03 47.64 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 20 C -0.10 -3.83 5.31 30.60 0.16 -3.67 16 21 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 25 H 0.05 1.45 7.87 -2.38 -0.02 1.43 16 26 H 0.06 1.96 7.87 -2.39 -0.02 1.94 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.03 1.51 7.68 -2.39 -0.02 1.49 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -69.56 278.18 4.40 -65.16 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.04 Total: 12.63 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.18 Total: -31.49 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.30 Total: -59.77 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -2.15 Total: -34.17 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.56 4.40 -65.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721580519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.398 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds