Wall clock time and date at job start Mon Mar 30 2020 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00197 * 2 1 4 4 H 1.48494 * 109.47300 * 239.99910 * 3 2 1 5 5 H 1.48495 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47112 * 119.99975 * 3 2 1 7 7 C 1.37879 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99793 * 359.72528 * 7 2 1 10 10 N 1.46901 * 109.47145 * 175.27544 * 9 7 2 11 11 C 1.46849 * 110.99656 * 300.67681 * 10 9 7 12 12 C 1.53039 * 109.52560 * 185.83926 * 11 10 9 13 13 C 1.53120 * 109.27794 * 300.82272 * 12 11 10 14 14 C 1.53119 * 109.16049 * 57.65314 * 13 12 11 15 15 N 1.46898 * 109.50215 * 62.28565 * 14 13 12 16 16 C 1.52998 * 109.50452 * 182.40577 * 14 13 12 17 17 O 1.42901 * 109.47002 * 299.80610 * 16 14 13 18 18 C 1.46844 * 111.00350 * 64.88595 * 10 9 7 19 19 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47390 * 295.26663 * 9 7 2 21 21 H 1.09004 * 109.47607 * 55.27179 * 9 7 2 22 22 H 1.09001 * 109.46861 * 305.85670 * 11 10 9 23 23 H 1.09008 * 109.46305 * 65.82182 * 11 10 9 24 24 H 1.09001 * 109.50315 * 180.87581 * 12 11 10 25 25 H 1.08995 * 109.50046 * 60.76310 * 12 11 10 26 26 H 1.08997 * 109.52070 * 297.74695 * 13 12 11 27 27 H 1.08997 * 109.57520 * 177.58747 * 13 12 11 28 28 H 1.00896 * 111.00017 * 60.20326 * 15 14 13 29 29 H 1.00908 * 110.99852 * 184.15393 * 15 14 13 30 30 H 1.09007 * 109.46888 * 59.79989 * 16 14 13 31 31 H 1.08992 * 109.47259 * 179.80066 * 16 14 13 32 32 H 0.96694 * 114.00298 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.46009 * 294.18242 * 18 10 9 34 34 H 1.08994 * 109.46255 * 54.15931 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 0.0051 10 7 2.2010 -3.6136 -0.1107 11 6 2.9832 -3.5117 -1.3493 12 6 3.8547 -4.7596 -1.5081 13 6 4.7889 -4.8806 -0.3009 14 6 3.9510 -4.9364 0.9794 15 7 3.0957 -6.1304 0.9542 16 6 4.8785 -4.9970 2.1947 17 8 5.6946 -6.1671 2.1132 18 6 3.0766 -3.6833 1.0660 19 1 -0.4850 0.8401 -0.0004 20 1 0.6933 -2.5927 0.9370 21 1 0.5588 -2.5228 -0.8366 22 1 2.3070 -3.4304 -2.2004 23 1 3.6193 -2.6276 -1.3055 24 1 4.4467 -4.6765 -2.4195 25 1 3.2186 -5.6428 -1.5659 26 1 5.4517 -4.0161 -0.2652 27 1 5.3820 -5.7910 -0.3879 28 1 3.6503 -6.9713 0.8973 29 1 2.4842 -6.1542 1.7565 30 1 5.5138 -4.1113 2.2114 31 1 4.2815 -5.0330 3.1059 32 1 6.3086 -6.2708 2.8529 33 1 3.7123 -2.7984 1.0986 34 1 2.4683 -3.7269 1.9693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885432602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:19 Heat of formation + Delta-G solvation = -54.081951 kcal Electronic energy + Delta-G solvation = -15280.516537 eV Core-core repulsion = 12826.713869 eV Total energy + Delta-G solvation = -2453.802668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07557 -36.54999 -34.10550 -32.38986 -31.32266 -28.55995 -26.72037 -25.38739 -23.84503 -21.68595 -20.25102 -18.53426 -17.34951 -16.32257 -15.22544 -15.16742 -14.77035 -14.42912 -14.03170 -13.92900 -13.10938 -12.72132 -12.37599 -12.21727 -11.60259 -11.57860 -11.26847 -11.01214 -10.88374 -10.33472 -10.25130 -10.13269 -10.01299 -9.77252 -9.73141 -9.34734 -8.40842 -8.12272 -6.99084 -5.98776 -4.09296 3.28367 3.33717 3.35669 4.15757 4.41602 4.90099 5.13419 5.17060 5.29721 5.33257 5.50541 5.58815 5.72462 5.92081 6.03763 6.18083 6.38791 6.48630 6.51461 6.59642 6.63649 6.88108 7.09672 7.35872 7.52871 7.57067 7.67472 7.93993 7.95457 8.17649 8.36351 8.44948 9.02712 9.57377 11.04793 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040301 B = 0.008345 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.597207 B = 3354.500834 C = 3499.395604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.186 3.814 10 N -0.520 5.520 11 C 0.067 3.933 12 C -0.110 4.110 13 C -0.097 4.097 14 C 0.126 3.874 15 N -0.812 5.812 16 C 0.044 3.956 17 O -0.571 6.571 18 C 0.081 3.919 19 H 0.262 0.738 20 H 0.025 0.975 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.334 0.666 29 H 0.334 0.666 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.374 0.626 33 H 0.038 0.962 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -9.347 3.283 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.589 4.589 8 H 0.073 0.927 9 C 0.061 3.939 10 N -0.243 5.243 11 C -0.061 4.061 12 C -0.148 4.148 13 C -0.135 4.135 14 C 0.032 3.968 15 N -0.340 5.340 16 C -0.037 4.037 17 O -0.376 6.376 18 C -0.049 4.049 19 H 0.072 0.928 20 H 0.043 0.957 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.220 0.780 33 H 0.056 0.944 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.316 -9.436 2.008 12.736 hybrid contribution 1.758 1.793 1.628 2.993 sum 10.074 -7.642 3.636 13.157 Atomic orbital electron populations 1.69941 1.05976 1.26849 1.50178 1.24967 0.94758 0.99046 0.95017 0.86733 0.79715 0.83467 0.78550 1.20271 1.21181 1.20388 1.21760 0.93238 0.92290 1.51595 0.92711 1.19760 0.91039 0.85404 0.97718 1.62274 1.16682 1.45492 0.99892 1.21822 0.95577 0.95100 0.93617 1.21540 0.97444 1.00127 0.95706 1.21434 0.96871 1.00775 0.94418 1.20955 0.90825 0.92701 0.92281 1.58656 1.23274 1.03266 1.48809 1.23157 0.93692 0.87289 0.99528 1.86425 1.55389 1.45316 1.50448 1.21737 0.94646 0.93198 0.95323 0.92791 0.95670 0.94684 0.91943 0.95061 0.93339 0.90589 0.92837 0.92247 0.85344 0.85318 0.93530 0.93882 0.78002 0.94427 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.55 -15.24 7.72 -34.44 -0.27 -15.51 16 8 H 0.05 1.50 5.86 -52.49 -0.31 1.20 16 9 C 0.19 4.90 5.12 -4.97 -0.03 4.88 16 10 N -0.52 -11.47 4.71 -236.11 -1.11 -12.58 16 11 C 0.07 1.40 5.03 -3.83 -0.02 1.38 16 12 C -0.11 -1.89 5.93 -26.65 -0.16 -2.05 16 13 C -0.10 -1.55 4.78 -26.61 -0.13 -1.68 16 14 C 0.13 2.00 0.66 -131.52 -0.09 1.91 16 15 N -0.81 -12.26 8.09 0.81 0.01 -12.26 16 16 C 0.04 0.58 6.13 37.16 0.23 0.81 16 17 O -0.57 -6.71 12.45 -35.23 -0.44 -7.14 16 18 C 0.08 1.57 3.99 -3.83 -0.02 1.56 16 19 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 20 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 21 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 1.33 8.12 -51.93 -0.42 0.90 16 23 H 0.03 0.69 6.73 -51.92 -0.35 0.34 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.91 7.77 -51.93 -0.40 0.50 16 28 H 0.33 4.66 8.45 -39.29 -0.33 4.32 16 29 H 0.33 4.81 8.99 -39.29 -0.35 4.46 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.37 2.70 9.12 45.56 0.42 3.12 16 33 H 0.04 0.80 6.86 -51.93 -0.36 0.44 16 34 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -30.16 269.00 -6.94 -37.10 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.60 Total: 6.99 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.57 Total: -6.97 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.37 Total: -50.55 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.44 Total: -7.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.16 -6.94 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885432602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.982 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds