Wall clock time and date at job start Mon Mar 30 2020 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00197 * 2 1 4 4 H 1.48494 * 109.47300 * 239.99910 * 3 2 1 5 5 H 1.48495 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47112 * 119.99975 * 3 2 1 7 7 C 1.37879 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99793 * 359.72528 * 7 2 1 10 10 N 1.46901 * 109.47145 * 175.27544 * 9 7 2 11 11 C 1.46849 * 110.99656 * 300.67681 * 10 9 7 12 12 C 1.53039 * 109.52560 * 185.83926 * 11 10 9 13 13 C 1.53120 * 109.27794 * 300.82272 * 12 11 10 14 14 C 1.53119 * 109.16049 * 57.65314 * 13 12 11 15 15 N 1.46898 * 109.50215 * 62.28565 * 14 13 12 16 16 C 1.52998 * 109.50452 * 182.40577 * 14 13 12 17 17 O 1.42901 * 109.47002 * 299.80610 * 16 14 13 18 18 C 1.46844 * 111.00350 * 64.88595 * 10 9 7 19 19 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47390 * 295.26663 * 9 7 2 21 21 H 1.09004 * 109.47607 * 55.27179 * 9 7 2 22 22 H 1.09001 * 109.46861 * 305.85670 * 11 10 9 23 23 H 1.09008 * 109.46305 * 65.82182 * 11 10 9 24 24 H 1.09001 * 109.50315 * 180.87581 * 12 11 10 25 25 H 1.08995 * 109.50046 * 60.76310 * 12 11 10 26 26 H 1.08997 * 109.52070 * 297.74695 * 13 12 11 27 27 H 1.08997 * 109.57520 * 177.58747 * 13 12 11 28 28 H 1.00896 * 111.00017 * 60.20326 * 15 14 13 29 29 H 1.00908 * 110.99852 * 184.15393 * 15 14 13 30 30 H 1.09007 * 109.46888 * 59.79989 * 16 14 13 31 31 H 1.08992 * 109.47259 * 179.80066 * 16 14 13 32 32 H 0.96694 * 114.00298 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.46009 * 294.18242 * 18 10 9 34 34 H 1.08994 * 109.46255 * 54.15931 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 0.0051 10 7 2.2010 -3.6136 -0.1107 11 6 2.9832 -3.5117 -1.3493 12 6 3.8547 -4.7596 -1.5081 13 6 4.7889 -4.8806 -0.3009 14 6 3.9510 -4.9364 0.9794 15 7 3.0957 -6.1304 0.9542 16 6 4.8785 -4.9970 2.1947 17 8 5.6946 -6.1671 2.1132 18 6 3.0766 -3.6833 1.0660 19 1 -0.4850 0.8401 -0.0004 20 1 0.6933 -2.5927 0.9370 21 1 0.5588 -2.5228 -0.8366 22 1 2.3070 -3.4304 -2.2004 23 1 3.6193 -2.6276 -1.3055 24 1 4.4467 -4.6765 -2.4195 25 1 3.2186 -5.6428 -1.5659 26 1 5.4517 -4.0161 -0.2652 27 1 5.3820 -5.7910 -0.3879 28 1 3.6503 -6.9713 0.8973 29 1 2.4842 -6.1542 1.7565 30 1 5.5138 -4.1113 2.2114 31 1 4.2815 -5.0330 3.1059 32 1 6.3086 -6.2708 2.8529 33 1 3.7123 -2.7984 1.0986 34 1 2.4683 -3.7269 1.9693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885432602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:19 Heat of formation + Delta-G solvation = -79.792910 kcal Electronic energy + Delta-G solvation = -15281.631448 eV Core-core repulsion = 12826.713869 eV Total energy + Delta-G solvation = -2454.917579 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49205 -37.78727 -35.68341 -34.23587 -32.91975 -29.87595 -28.71246 -26.65137 -25.72570 -23.32224 -21.88531 -20.01532 -18.54535 -18.17135 -16.93723 -16.44699 -16.12457 -16.02243 -15.50896 -15.34887 -14.83060 -14.44405 -13.85239 -13.69082 -13.27030 -13.07961 -12.85219 -12.83552 -12.57951 -12.22591 -12.09655 -11.82394 -11.58821 -11.36297 -11.07774 -10.85738 -10.60839 -9.30156 -8.89540 -8.12660 -6.35626 1.35672 1.37388 1.45647 2.36492 3.03753 3.10335 3.62824 3.76287 3.92850 3.98321 4.24436 4.39251 4.48286 4.54311 4.64985 4.72529 4.92493 4.95830 5.01928 5.05934 5.20466 5.29979 5.33361 5.37520 5.60219 5.74845 6.07263 6.31419 6.43128 6.67698 6.82132 6.87925 6.89118 7.36253 8.87025 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040301 B = 0.008345 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.597207 B = 3354.500834 C = 3499.395604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.558 4.558 8 H 0.056 0.944 9 C 0.200 3.800 10 N -0.520 5.520 11 C 0.068 3.932 12 C -0.100 4.100 13 C -0.094 4.094 14 C 0.130 3.870 15 N -0.818 5.818 16 C 0.054 3.946 17 O -0.577 6.577 18 C 0.082 3.918 19 H 0.265 0.735 20 H 0.001 0.999 21 H 0.003 0.997 22 H 0.048 0.952 23 H 0.014 0.986 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.344 0.656 29 H 0.338 0.662 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.396 0.604 33 H 0.020 0.980 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.454 -9.823 3.671 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.243 5.243 11 C -0.061 4.061 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.037 3.963 15 N -0.348 5.348 16 C -0.026 4.026 17 O -0.384 6.384 18 C -0.047 4.047 19 H 0.074 0.926 20 H 0.019 0.981 21 H 0.021 0.979 22 H 0.066 0.934 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.039 0.961 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.389 -9.941 2.412 14.580 hybrid contribution 1.105 1.877 1.509 2.650 sum 11.494 -8.064 3.921 14.578 Atomic orbital electron populations 1.70071 1.07619 1.27940 1.51004 1.25849 0.95629 1.02899 0.94510 0.85620 0.78443 0.78752 0.78967 1.19549 1.20619 1.19344 1.21971 0.93312 0.93044 1.51342 0.92635 1.19415 0.91423 0.86893 0.94998 1.62214 1.17340 1.43158 1.01606 1.21859 0.95282 0.96540 0.92378 1.21453 0.97159 0.97614 0.97508 1.21424 0.96611 1.01503 0.93660 1.20759 0.90701 0.91015 0.93859 1.58588 1.23558 1.03390 1.49310 1.22846 0.93584 0.88039 0.98170 1.86358 1.55787 1.44290 1.52012 1.21748 0.94298 0.94822 0.93811 0.92584 0.98054 0.97869 0.93386 0.96792 0.91117 0.90888 0.92924 0.90578 0.84169 0.84882 0.93383 0.92988 0.75389 0.96144 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.56 -31.53 7.72 25.60 0.20 -31.33 16 8 H 0.06 3.08 5.86 -2.91 -0.02 3.06 16 9 C 0.20 10.91 5.12 85.56 0.44 11.34 16 10 N -0.52 -23.35 4.71 -900.90 -4.24 -27.60 16 11 C 0.07 2.82 5.03 86.33 0.43 3.26 16 12 C -0.10 -3.24 5.93 30.65 0.18 -3.06 16 13 C -0.09 -2.79 4.78 30.67 0.15 -2.64 16 14 C 0.13 3.90 0.66 3.58 0.00 3.90 16 15 N -0.82 -23.18 8.09 -151.36 -1.22 -24.41 16 16 C 0.05 1.29 6.13 71.98 0.44 1.73 16 17 O -0.58 -11.49 12.45 -148.98 -1.86 -13.35 16 18 C 0.08 3.21 3.99 86.33 0.34 3.56 16 19 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 20 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 21 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 22 H 0.05 2.09 8.12 -2.39 -0.02 2.07 16 23 H 0.01 0.62 6.73 -2.38 -0.02 0.61 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 2.45 7.72 -2.39 -0.02 2.43 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 2.06 7.77 -2.39 -0.02 2.04 16 28 H 0.34 8.67 8.45 -89.70 -0.76 7.91 16 29 H 0.34 9.20 8.99 -89.69 -0.81 8.40 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.40 4.22 9.12 -74.06 -0.68 3.54 16 33 H 0.02 0.86 6.86 -2.39 -0.02 0.85 16 34 H 0.05 2.15 8.08 -2.39 -0.02 2.13 16 Total: -1.00 -64.80 269.00 -3.49 -68.30 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -1.13 Total: 18.79 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 2.65 Total: -12.18 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -5.18 Total: -107.81 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -1.86 Total: -13.35 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.80 -3.49 -68.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885432602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.496 kcal (2) G-P(sol) polarization free energy of solvation -64.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds