Wall clock time and date at job start Mon Mar 30 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48499 * 109.46756 * 239.99834 * 3 2 1 5 5 H 1.48497 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47060 * 120.00316 * 3 2 1 7 7 C 1.37878 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99455 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00359 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00056 * 170.00214 * 10 9 7 12 12 C 1.53035 * 109.52744 * 185.84176 * 11 10 9 13 13 C 1.53124 * 109.27475 * 300.82106 * 12 11 10 14 14 N 1.46902 * 109.52080 * 297.74474 * 13 12 11 15 15 C 1.52995 * 109.57379 * 177.58982 * 13 12 11 16 16 O 1.42896 * 109.47597 * 65.28322 * 15 13 12 17 17 C 1.53123 * 109.16220 * 57.64849 * 13 12 11 18 18 C 1.46846 * 110.99964 * 294.21182 * 10 9 7 19 19 H 0.97001 * 120.00149 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47122 * 59.99824 * 9 7 2 21 21 H 1.09003 * 109.47471 * 300.00514 * 9 7 2 22 22 H 1.09008 * 109.46456 * 305.85644 * 11 10 9 23 23 H 1.09003 * 109.46474 * 65.82149 * 11 10 9 24 24 H 1.08993 * 109.50220 * 60.75645 * 12 11 10 25 25 H 1.08992 * 109.50519 * 180.88040 * 12 11 10 26 26 H 1.00894 * 111.00548 * 299.68309 * 14 13 12 27 27 H 1.00905 * 111.00025 * 63.64030 * 14 13 12 28 28 H 1.08999 * 109.47434 * 185.28427 * 15 13 12 29 29 H 1.09003 * 109.47480 * 305.28234 * 15 13 12 30 30 H 0.96698 * 114.00718 * 179.97438 * 16 15 13 31 31 H 1.09001 * 109.50279 * 182.40035 * 17 13 12 32 32 H 1.09000 * 109.49827 * 62.29028 * 17 13 12 33 33 H 1.09009 * 109.46169 * 294.17270 * 18 10 9 34 34 H 1.08995 * 109.46669 * 54.15371 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5217 -4.8929 0.2406 12 6 2.5582 -6.0103 0.3785 13 6 3.3911 -6.0882 -0.9041 14 7 2.5184 -6.4262 -2.0364 15 6 4.4690 -7.1632 -0.7507 16 8 3.8496 -8.4454 -0.6320 17 6 4.0540 -4.7311 -1.1562 18 6 2.9741 -3.6509 -1.2495 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 0.9364 -4.8254 1.1577 23 1 0.8598 -5.1129 -0.5971 24 1 3.2118 -5.7979 1.2244 25 1 2.0496 -6.9606 0.5403 26 1 2.0693 -7.3183 -1.8932 27 1 1.8366 -5.6998 -2.1968 28 1 5.1190 -7.1534 -1.6256 29 1 5.0595 -6.9608 0.1428 30 1 4.4745 -9.1765 -0.5317 31 1 4.6140 -4.7676 -2.0906 32 1 4.7312 -4.4987 -0.3343 33 1 2.3053 -3.8767 -2.0802 34 1 3.4438 -2.6813 -1.4146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885432664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:53 Heat of formation + Delta-G solvation = -53.974849 kcal Electronic energy + Delta-G solvation = -15080.886744 eV Core-core repulsion = 12627.088720 eV Total energy + Delta-G solvation = -2453.798024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35214 -36.59543 -34.30773 -32.36110 -30.42664 -29.47724 -27.67157 -25.52931 -22.70978 -22.30901 -20.61438 -18.40730 -17.36044 -16.32841 -15.85143 -15.11978 -14.87336 -14.31708 -14.12297 -13.95418 -13.44918 -12.96381 -12.46903 -12.12150 -11.92446 -11.78955 -11.12895 -10.97464 -10.84348 -10.67540 -10.58087 -10.26512 -10.07464 -9.92801 -9.68224 -9.15873 -8.45031 -8.39708 -7.20375 -6.02401 -4.03983 3.33772 3.37709 3.40635 4.24687 4.42483 4.67724 4.92744 5.02733 5.19565 5.33107 5.35752 5.57994 5.63489 5.72097 5.87897 6.01561 6.08996 6.15172 6.32714 6.42101 6.45344 6.67331 6.76393 7.30665 7.35094 7.39159 7.62074 7.72803 7.80498 8.10291 8.21661 8.55980 9.03394 9.60256 11.08472 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.062629 B = 0.006882 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.970747 B = 4067.887814 C = 4254.994153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.054 3.946 12 C -0.137 4.137 13 C 0.122 3.878 14 N -0.837 5.837 15 C 0.091 3.909 16 O -0.572 6.572 17 C -0.105 4.105 18 C 0.065 3.935 19 H 0.262 0.738 20 H -0.010 1.010 21 H 0.029 0.971 22 H 0.068 0.932 23 H 0.017 0.983 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.342 0.658 27 H 0.341 0.659 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.374 0.626 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 -12.898 -1.479 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.075 4.075 12 C -0.177 4.177 13 C 0.029 3.971 14 N -0.369 5.369 15 C 0.013 3.987 16 O -0.376 6.376 17 C -0.143 4.143 18 C -0.063 4.063 19 H 0.071 0.929 20 H 0.008 0.992 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.035 0.965 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.480 -12.303 -1.596 14.487 hybrid contribution -0.491 0.530 0.171 0.742 sum 6.989 -11.773 -1.426 13.766 Atomic orbital electron populations 1.69953 1.06081 1.26887 1.50958 1.24996 0.94863 0.99320 0.95430 0.86552 0.79430 0.82735 0.78641 1.20263 1.21363 1.20175 1.21123 0.93445 0.89945 1.50142 0.91905 1.19702 0.90069 0.87403 0.96012 1.62039 1.27863 1.02510 1.33704 1.22023 0.94865 0.90716 0.99899 1.22287 0.98805 0.97899 0.98720 1.20839 0.92979 0.93676 0.89612 1.58952 1.27855 1.07793 1.42280 1.22274 0.94541 0.82728 0.99202 1.86430 1.37971 1.16539 1.96678 1.21653 0.98458 0.92534 1.01642 1.21915 0.94972 0.98837 0.90597 0.92872 0.99226 0.95291 0.91391 0.96516 0.91231 0.91938 0.84507 0.84385 0.93322 0.93556 0.77982 0.91524 0.91046 0.95931 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.34 8.43 -34.44 -0.29 -14.63 16 8 H 0.06 1.75 7.12 -52.48 -0.37 1.37 16 9 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 10 N -0.54 -11.64 4.65 -236.12 -1.10 -12.74 16 11 C 0.05 1.00 5.22 -3.84 -0.02 0.98 16 12 C -0.14 -2.14 4.92 -26.65 -0.13 -2.28 16 13 C 0.12 1.78 0.77 -131.48 -0.10 1.67 16 14 N -0.84 -12.18 8.78 0.85 0.01 -12.18 16 15 C 0.09 1.10 6.12 37.15 0.23 1.32 16 16 O -0.57 -6.47 12.49 -35.23 -0.44 -6.91 16 17 C -0.10 -1.65 5.08 -26.65 -0.14 -1.79 16 18 C 0.07 1.28 5.06 -3.84 -0.02 1.26 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 21 H 0.03 0.82 7.99 -51.93 -0.41 0.40 16 22 H 0.07 1.28 8.02 -51.92 -0.42 0.87 16 23 H 0.02 0.31 6.83 -51.93 -0.35 -0.04 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 26 H 0.34 4.75 8.30 -39.30 -0.33 4.43 16 27 H 0.34 5.34 5.60 -39.29 -0.22 5.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.37 2.49 9.12 45.56 0.42 2.91 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.45 6.64 -51.92 -0.34 0.10 16 34 H 0.09 1.83 6.70 -51.93 -0.35 1.48 16 LS Contribution 267.22 15.07 4.03 4.03 Total: -1.00 -30.49 267.22 -6.84 -37.33 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.46 Total: 6.86 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.59 Total: -6.91 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.35 Total: -51.09 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.44 Total: -6.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.49 -6.84 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885432664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds