Wall clock time and date at job start Mon Mar 30 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48499 * 109.46756 * 239.99834 * 3 2 1 5 5 H 1.48497 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47060 * 120.00316 * 3 2 1 7 7 C 1.37878 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99455 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00359 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00056 * 170.00214 * 10 9 7 12 12 C 1.53035 * 109.52744 * 185.84176 * 11 10 9 13 13 C 1.53124 * 109.27475 * 300.82106 * 12 11 10 14 14 N 1.46902 * 109.52080 * 297.74474 * 13 12 11 15 15 C 1.52995 * 109.57379 * 177.58982 * 13 12 11 16 16 O 1.42896 * 109.47597 * 65.28322 * 15 13 12 17 17 C 1.53123 * 109.16220 * 57.64849 * 13 12 11 18 18 C 1.46846 * 110.99964 * 294.21182 * 10 9 7 19 19 H 0.97001 * 120.00149 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47122 * 59.99824 * 9 7 2 21 21 H 1.09003 * 109.47471 * 300.00514 * 9 7 2 22 22 H 1.09008 * 109.46456 * 305.85644 * 11 10 9 23 23 H 1.09003 * 109.46474 * 65.82149 * 11 10 9 24 24 H 1.08993 * 109.50220 * 60.75645 * 12 11 10 25 25 H 1.08992 * 109.50519 * 180.88040 * 12 11 10 26 26 H 1.00894 * 111.00548 * 299.68309 * 14 13 12 27 27 H 1.00905 * 111.00025 * 63.64030 * 14 13 12 28 28 H 1.08999 * 109.47434 * 185.28427 * 15 13 12 29 29 H 1.09003 * 109.47480 * 305.28234 * 15 13 12 30 30 H 0.96698 * 114.00718 * 179.97438 * 16 15 13 31 31 H 1.09001 * 109.50279 * 182.40035 * 17 13 12 32 32 H 1.09000 * 109.49827 * 62.29028 * 17 13 12 33 33 H 1.09009 * 109.46169 * 294.17270 * 18 10 9 34 34 H 1.08995 * 109.46669 * 54.15371 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5217 -4.8929 0.2406 12 6 2.5582 -6.0103 0.3785 13 6 3.3911 -6.0882 -0.9041 14 7 2.5184 -6.4262 -2.0364 15 6 4.4690 -7.1632 -0.7507 16 8 3.8496 -8.4454 -0.6320 17 6 4.0540 -4.7311 -1.1562 18 6 2.9741 -3.6509 -1.2495 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 0.9364 -4.8254 1.1577 23 1 0.8598 -5.1129 -0.5971 24 1 3.2118 -5.7979 1.2244 25 1 2.0496 -6.9606 0.5403 26 1 2.0693 -7.3183 -1.8932 27 1 1.8366 -5.6998 -2.1968 28 1 5.1190 -7.1534 -1.6256 29 1 5.0595 -6.9608 0.1428 30 1 4.4745 -9.1765 -0.5317 31 1 4.6140 -4.7676 -2.0906 32 1 4.7312 -4.4987 -0.3343 33 1 2.3053 -3.8767 -2.0802 34 1 3.4438 -2.6813 -1.4146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885432664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:53 Heat of formation + Delta-G solvation = -79.818619 kcal Electronic energy + Delta-G solvation = -15082.007414 eV Core-core repulsion = 12627.088720 eV Total energy + Delta-G solvation = -2454.918694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69560 -37.75139 -35.80684 -34.34689 -31.86142 -30.88475 -29.23407 -27.16553 -24.26817 -23.96915 -22.21419 -19.70946 -18.48232 -18.26812 -17.19369 -16.63749 -16.26549 -15.85533 -15.73336 -15.20184 -15.01009 -14.29739 -14.09421 -13.79614 -13.47910 -13.25288 -12.84287 -12.61752 -12.46624 -12.33012 -12.11401 -11.97159 -11.63989 -11.39147 -11.03708 -10.81866 -10.62113 -9.60751 -9.00254 -8.21691 -6.32443 1.40829 1.44320 1.52260 2.39682 3.10301 3.25653 3.37371 3.54518 3.80430 3.94194 4.19159 4.31166 4.38250 4.55829 4.57084 4.70271 4.75530 4.79494 4.96234 5.02692 5.09692 5.15299 5.17132 5.34443 5.35753 5.63635 6.03453 6.21612 6.32883 6.56156 6.62759 6.83587 6.99785 7.37536 8.89417 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.062629 B = 0.006882 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.970747 B = 4067.887814 C = 4254.994153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.540 5.540 11 C 0.052 3.948 12 C -0.125 4.125 13 C 0.120 3.880 14 N -0.834 5.834 15 C 0.098 3.902 16 O -0.584 6.584 17 C -0.095 4.095 18 C 0.066 3.934 19 H 0.265 0.735 20 H -0.040 1.040 21 H 0.000 1.000 22 H 0.058 0.942 23 H 0.016 0.984 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.347 0.653 27 H 0.332 0.668 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.017 0.983 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 -13.673 -1.588 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.265 5.265 11 C -0.077 4.077 12 C -0.165 4.165 13 C 0.027 3.973 14 N -0.366 5.366 15 C 0.020 3.980 16 O -0.392 6.392 17 C -0.133 4.133 18 C -0.062 4.062 19 H 0.073 0.927 20 H -0.023 1.023 21 H 0.019 0.981 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.146 0.854 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.246 0.754 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.419 -13.128 -1.706 16.248 hybrid contribution -1.132 0.698 0.199 1.345 sum 8.287 -12.430 -1.507 15.015 Atomic orbital electron populations 1.70089 1.07835 1.28022 1.51697 1.25954 0.95751 1.03331 0.94693 0.85401 0.78127 0.77700 0.79189 1.19105 1.20850 1.19241 1.21432 0.93660 0.90974 1.50225 0.91728 1.19359 0.90156 0.89200 0.93179 1.61976 1.26886 1.02588 1.35028 1.22103 0.95875 0.90337 0.99355 1.22204 0.98007 0.96730 0.99547 1.20878 0.93514 0.94154 0.88749 1.58973 1.27651 1.07729 1.42210 1.22102 0.93254 0.82345 1.00326 1.86367 1.39226 1.16933 1.96721 1.21569 0.97143 0.91810 1.02801 1.21909 0.95529 0.99395 0.89349 0.92662 1.02255 0.98146 0.92351 0.96570 0.91178 0.90710 0.83904 0.85402 0.92387 0.92191 0.75426 0.89847 0.90486 0.96529 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.52 -30.22 8.43 25.60 0.22 -30.00 16 8 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 9 C 0.21 11.39 4.72 85.55 0.40 11.80 16 10 N -0.54 -23.85 4.65 -900.94 -4.19 -28.04 16 11 C 0.05 1.93 5.22 86.33 0.45 2.39 16 12 C -0.13 -3.69 4.92 30.65 0.15 -3.54 16 13 C 0.12 3.22 0.77 3.61 0.00 3.22 16 14 N -0.83 -22.79 8.78 -151.24 -1.33 -24.12 16 15 C 0.10 2.02 6.12 71.98 0.44 2.46 16 16 O -0.58 -11.16 12.49 -148.98 -1.86 -13.03 16 17 C -0.10 -2.83 5.08 30.65 0.16 -2.67 16 18 C 0.07 2.60 5.06 86.32 0.44 3.04 16 19 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 20 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 21 H 0.00 0.03 7.99 -2.39 -0.02 0.01 16 22 H 0.06 2.25 8.02 -2.38 -0.02 2.24 16 23 H 0.02 0.61 6.83 -2.39 -0.02 0.59 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.07 2.06 7.91 -2.39 -0.02 2.04 16 26 H 0.35 8.92 8.30 -89.70 -0.74 8.18 16 27 H 0.33 10.15 5.60 -89.69 -0.50 9.65 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.40 3.79 9.12 -74.06 -0.68 3.11 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.02 0.67 6.64 -2.38 -0.02 0.65 16 34 H 0.06 2.76 6.70 -2.39 -0.02 2.74 16 Total: -1.00 -65.80 267.22 -3.16 -68.96 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.81 Total: 19.38 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 2.72 Total: -12.82 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -5.23 Total: -109.10 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.86 Total: -13.03 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.80 -3.16 -68.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885432664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.862 kcal (2) G-P(sol) polarization free energy of solvation -65.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds