Wall clock time and date at job start Mon Mar 30 2020 03:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.34914 * 116.99758 * 2 1 4 4 C 1.35350 * 126.53558 * 359.97438 * 3 2 1 5 5 C 1.37278 * 129.46747 * 179.97438 * 4 3 2 6 6 C 1.50696 * 132.89683 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47358 * 359.97438 * 6 5 4 8 8 O 1.42903 * 109.47131 * 239.99389 * 6 5 4 9 9 C 1.50707 * 109.47163 * 120.00192 * 6 5 4 10 10 H 1.07995 * 119.99310 * 359.97438 * 9 6 5 11 11 C 1.37872 * 119.99931 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99867 * 179.97438 * 11 9 6 13 13 Si 1.86795 * 120.00226 * 359.97438 * 11 9 6 14 14 H 1.48500 * 109.47385 * 90.00022 * 13 11 9 15 15 H 1.48504 * 109.47165 * 209.99884 * 13 11 9 16 16 H 1.48500 * 109.47346 * 330.00169 * 13 11 9 17 17 S 1.78592 * 94.19882 * 0.25411 * 5 4 3 18 18 N 1.33890 * 126.53401 * 179.97438 * 3 2 1 19 19 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47376 * 300.00385 * 1 2 3 21 21 H 1.08995 * 109.47012 * 60.00968 * 1 2 3 22 22 H 0.96700 * 114.00311 * 300.00591 * 8 6 5 23 23 H 0.97000 * 120.00088 * 179.97438 * 12 11 9 24 24 H 0.97004 * 124.76963 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0415 1.2021 0.0000 4 6 1.4383 2.4138 -0.0005 5 6 1.9981 3.6672 0.0000 6 6 1.4084 5.0540 -0.0010 7 1 0.3205 4.9862 -0.0028 8 8 1.8434 5.7558 -1.1673 9 6 1.8641 5.7946 1.2299 10 1 2.5152 5.3093 1.9418 11 6 1.4497 7.0915 1.4470 12 7 1.8470 7.7376 2.5215 13 14 0.3240 7.9310 0.2153 14 1 -1.0916 7.6796 0.5869 15 1 0.5854 9.3928 0.2220 16 1 0.5832 7.3880 -1.1424 17 16 3.6777 3.0603 -0.0066 18 7 3.3619 1.4239 0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 2.8032 5.8538 -1.2323 23 1 1.5558 8.6501 2.6741 24 1 4.0395 0.7298 0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885449003.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:51 Heat of formation + Delta-G solvation = 31.676964 kcal Electronic energy + Delta-G solvation = -12081.463219 eV Core-core repulsion = 9704.747357 eV Total energy + Delta-G solvation = -2376.715863 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61025 -36.65968 -36.06962 -32.34472 -30.93438 -27.55506 -27.37991 -24.22532 -21.77130 -19.11633 -18.46964 -17.56677 -17.19977 -15.92274 -15.38571 -14.97052 -14.61618 -13.78559 -13.37015 -12.92469 -12.80104 -11.89175 -11.62003 -11.24190 -10.90901 -10.84746 -10.62025 -10.28692 -9.28029 -8.83141 -8.55711 -8.41312 -7.47527 -6.35842 -6.19062 -4.32788 0.88220 0.93363 2.46684 3.40642 3.49174 3.53086 3.73313 3.86139 4.49745 4.97534 5.12665 5.33074 5.52659 5.59558 5.84552 5.89513 6.39189 6.54958 7.08099 7.35441 7.57373 7.80113 8.19442 8.70444 8.88019 9.41224 10.90417 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.042721 B = 0.009089 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.259443 B = 3080.065043 C = 3311.881533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 O -0.306 6.306 3 C 0.439 3.561 4 C -0.663 4.663 5 C 0.105 3.895 6 C 0.273 3.727 7 H 0.101 0.899 8 O -0.569 6.569 9 C -0.563 4.563 10 H 0.076 0.924 11 C 0.089 3.911 12 N -0.884 5.884 13 Si 0.870 3.130 14 H -0.281 1.281 15 H -0.293 1.293 16 H -0.215 1.215 17 S 0.146 5.854 18 N -0.656 5.656 19 H 0.093 0.907 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.356 0.644 23 H 0.268 0.732 24 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -11.532 -5.922 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 O -0.213 6.213 3 C 0.254 3.746 4 C -0.696 4.696 5 C -0.017 4.017 6 C 0.211 3.789 7 H 0.118 0.882 8 O -0.374 6.374 9 C -0.600 4.600 10 H 0.094 0.906 11 C -0.117 4.117 12 N -0.520 5.520 13 Si 0.696 3.304 14 H -0.207 1.207 15 H -0.220 1.220 16 H -0.138 1.138 17 S 0.311 5.689 18 N -0.371 5.371 19 H 0.111 0.889 20 H 0.091 0.909 21 H 0.090 0.910 22 H 0.203 0.797 23 H 0.078 0.922 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.611 -11.166 -5.952 12.756 hybrid contribution 0.065 -0.624 -0.018 0.627 sum 1.676 -11.790 -5.971 13.321 Atomic orbital electron populations 1.23085 0.73579 1.02201 1.04528 1.85398 1.24940 1.24172 1.86814 1.18983 0.81651 0.85747 0.88262 1.34548 1.51113 0.87057 0.96837 1.28176 0.86441 0.98543 0.88574 1.18556 0.95766 0.79035 0.85494 0.88151 1.86820 1.26245 1.77575 1.46775 1.21372 1.33268 0.98786 1.06622 0.90605 1.24952 0.94934 0.96812 0.95021 1.69934 1.43663 1.12039 1.26378 0.87020 0.80198 0.77841 0.85361 1.20704 1.21995 1.13760 1.84515 1.23270 0.85895 1.75228 1.50119 1.09490 1.12748 1.64741 0.88885 0.90922 0.91011 0.79731 0.92230 0.74881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.37 101.05 1.05 1.78 14 2 O -0.31 -4.74 10.53 -16.46 -0.17 -4.92 14 3 C 0.44 8.19 8.13 -17.68 -0.14 8.05 14 4 C -0.66 -14.71 13.09 -40.96 -0.54 -15.25 14 5 C 0.11 2.40 6.51 -34.66 -0.23 2.17 14 6 C 0.27 6.61 2.87 -29.03 -0.08 6.53 14 7 H 0.10 2.47 7.57 -51.93 -0.39 2.08 14 8 O -0.57 -12.90 10.13 -35.23 -0.36 -13.26 14 9 C -0.56 -15.55 9.33 -34.44 -0.32 -15.87 14 10 H 0.08 2.29 7.98 -52.49 -0.42 1.87 14 11 C 0.09 2.50 5.47 -17.82 -0.10 2.40 14 12 N -0.88 -26.36 13.96 55.43 0.77 -25.59 14 13 Si 0.87 21.06 26.99 -169.99 -4.59 16.47 14 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 14 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 14 16 H -0.22 -5.06 5.30 56.52 0.30 -4.76 14 17 S 0.15 2.77 23.58 -107.50 -2.53 0.24 14 18 N -0.66 -11.02 6.37 29.85 0.19 -10.83 14 19 H 0.09 0.76 8.14 -51.93 -0.42 0.33 14 20 H 0.07 0.92 8.09 -51.93 -0.42 0.50 14 21 H 0.07 0.88 8.09 -51.93 -0.42 0.46 14 22 H 0.36 7.09 9.03 45.56 0.41 7.50 14 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 14 24 H 0.41 5.29 8.96 -39.45 -0.35 4.93 14 LS Contribution 233.00 15.07 3.51 3.51 Total: -1.00 -32.81 233.00 -4.79 -37.60 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -1.25 Total: 6.97 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.36 Total: -10.19 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.96 Total: -36.42 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.53 Total: -18.18 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.59 Total: 16.47 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.53 Total: 0.24 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.81 -4.79 -37.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885449003.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.277 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds