Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99840 * 2 1 4 4 C 1.53001 * 109.46806 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.48212 * 301.84821 * 4 3 2 6 6 C 1.50700 * 109.46732 * 178.87509 * 5 4 3 7 7 H 1.07997 * 120.00626 * 0.37416 * 6 5 4 8 8 C 1.37879 * 119.99918 * 180.37079 * 6 5 4 9 9 N 1.31509 * 120.00260 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99756 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46910 * 89.99717 * 10 8 6 12 12 H 1.48498 * 109.46943 * 209.99611 * 10 8 6 13 13 H 1.48490 * 109.47049 * 329.99742 * 10 8 6 14 14 C 1.53092 * 109.47673 * 181.82595 * 4 3 2 15 15 C 1.53210 * 109.14945 * 297.61462 * 14 4 3 16 16 C 1.53174 * 109.04436 * 303.02845 * 15 14 4 17 17 C 1.53093 * 109.16565 * 56.97895 * 16 15 14 18 18 O 1.42907 * 109.47920 * 61.87313 * 4 3 2 19 19 H 1.09005 * 109.47171 * 59.99919 * 1 2 3 20 20 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47281 * 299.99960 * 1 2 3 22 22 H 1.09000 * 109.46963 * 300.00175 * 3 2 1 23 23 H 1.08995 * 109.46708 * 60.00033 * 3 2 1 24 24 H 1.08995 * 109.46944 * 298.87552 * 5 4 3 25 25 H 1.08999 * 109.47297 * 58.87728 * 5 4 3 26 26 H 0.97001 * 120.00101 * 180.02562 * 9 8 6 27 27 H 1.08991 * 109.52409 * 57.53010 * 14 4 3 28 28 H 1.09003 * 109.51821 * 177.72522 * 14 4 3 29 29 H 1.09004 * 109.53741 * 183.16224 * 15 14 4 30 30 H 1.09001 * 109.53830 * 62.89657 * 15 14 4 31 31 H 1.09007 * 109.52485 * 297.07657 * 16 15 14 32 32 H 1.08994 * 109.57600 * 176.92061 * 16 15 14 33 33 H 1.08998 * 109.48490 * 182.40650 * 17 16 15 34 34 H 1.09004 * 109.48003 * 62.36861 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9835 0.3859 1.2262 6 6 5.4837 0.2434 1.2119 7 1 6.0605 0.6841 0.4122 8 6 6.1200 -0.4496 2.2198 9 7 7.4291 -0.5745 2.2071 10 14 5.1224 -1.2126 3.6026 11 1 4.7391 -2.5981 3.2303 12 1 5.9375 -1.2410 4.8436 13 1 3.8977 -0.4052 3.8332 14 6 4.1582 2.5825 0.0466 15 6 3.7536 3.3547 -1.2132 16 6 4.1936 2.5623 -2.4480 17 6 3.5695 1.1652 -2.3974 18 8 3.9608 0.5137 -1.1872 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.6885 1.8464 -0.8900 23 1 1.6886 1.8464 0.8900 24 1 3.6768 0.9082 2.1323 25 1 3.5245 -0.6025 1.2035 26 1 7.8767 -1.0624 2.9159 27 1 3.8001 3.1119 0.9294 28 1 5.2441 2.4962 0.0879 29 1 4.2390 4.3306 -1.2143 30 1 2.6714 3.4841 -1.2296 31 1 5.2802 2.4756 -2.4571 32 1 3.8618 3.0770 -3.3496 33 1 3.9134 0.5823 -3.2518 34 1 2.4833 1.2510 -2.4291 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535677651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = -100.730657 kcal Electronic energy + Delta-G solvation = -15526.587075 eV Core-core repulsion = 13038.468816 eV Total energy + Delta-G solvation = -2488.118259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52722 -36.89081 -33.42022 -33.03844 -31.62450 -27.92402 -27.62399 -25.49630 -23.38999 -22.93583 -20.70294 -18.74112 -16.84399 -16.22757 -15.65743 -15.29169 -15.00823 -14.20668 -13.98192 -13.83134 -13.59483 -12.95076 -12.32295 -12.20715 -12.07602 -11.65801 -11.36535 -11.14164 -11.03585 -10.75428 -10.54188 -10.30902 -9.97500 -9.75844 -9.39485 -9.13485 -9.02950 -8.54254 -8.38192 -5.89534 -3.84303 3.41452 3.47571 3.51466 4.06671 4.57444 4.61864 5.17656 5.22104 5.28587 5.38533 5.43235 5.47158 5.54195 5.62384 5.65726 5.72428 5.80049 5.88904 5.95802 6.08798 6.20400 6.34855 6.38836 6.53453 6.80097 6.99752 7.22177 7.45820 7.51532 7.88354 8.18580 8.70706 9.18778 9.72947 11.24009 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.012185 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.497480 B = 2297.302777 C = 2961.585432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.033 3.967 4 C 0.139 3.861 5 C 0.001 3.999 6 C -0.498 4.498 7 H 0.078 0.922 8 C 0.064 3.936 9 N -0.907 5.907 10 Si 0.875 3.125 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.267 1.267 14 C -0.135 4.135 15 C -0.125 4.125 16 C -0.154 4.154 17 C 0.054 3.946 18 O -0.340 6.340 19 H 0.033 0.967 20 H 0.082 0.918 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.025 0.975 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.070 6.347 -6.215 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.288 6.288 3 C -0.043 4.043 4 C 0.099 3.901 5 C -0.036 4.036 6 C -0.536 4.536 7 H 0.096 0.904 8 C -0.136 4.136 9 N -0.547 5.547 10 Si 0.703 3.297 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.192 1.192 14 C -0.172 4.172 15 C -0.163 4.163 16 C -0.192 4.192 17 C -0.024 4.024 18 O -0.258 6.258 19 H 0.052 0.948 20 H 0.100 0.900 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.703 5.929 -6.102 14.469 hybrid contribution -0.883 0.085 0.711 1.137 sum -12.586 6.014 -5.392 14.955 Atomic orbital electron populations 1.22709 0.82622 1.02264 0.99176 1.88062 1.18122 1.27515 1.95116 1.23397 0.96596 0.84829 0.99526 1.21505 0.87718 0.92859 0.88014 1.19560 0.98162 0.95807 0.90086 1.21041 0.89501 1.33721 1.09364 0.90365 1.24978 0.94708 0.96026 0.97877 1.69909 1.07904 1.42991 1.33900 0.86854 0.80477 0.80378 0.82010 1.20323 1.21669 1.19225 1.22116 1.04022 0.94653 0.96438 1.21695 1.00116 0.98785 0.95666 1.22179 1.02261 0.97064 0.97721 1.22477 0.97495 0.93031 0.89359 1.88232 1.77071 1.48631 1.11889 0.94844 0.89976 0.94598 0.93659 0.93153 0.95670 0.95141 0.92997 0.91674 0.88636 0.92060 0.92790 0.90877 0.92063 0.89803 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.95 9.86 -43.17 -0.43 -7.37 16 3 C 0.03 0.59 4.16 37.16 0.15 0.75 16 4 C 0.14 2.91 0.53 -90.57 -0.05 2.86 16 5 C 0.00 0.03 3.17 -27.88 -0.09 -0.06 16 6 C -0.50 -14.51 8.56 -34.44 -0.29 -14.80 16 7 H 0.08 2.45 6.95 -52.49 -0.36 2.09 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 10 Si 0.87 22.52 27.46 -169.99 -4.67 17.86 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.27 -6.59 6.55 56.52 0.37 -6.22 16 14 C -0.13 -2.51 4.72 -26.58 -0.13 -2.64 16 15 C -0.13 -1.85 5.72 -26.53 -0.15 -2.01 16 16 C -0.15 -2.29 6.14 -26.59 -0.16 -2.45 16 17 C 0.05 0.90 6.52 37.21 0.24 1.15 16 18 O -0.34 -7.54 9.70 -43.17 -0.42 -7.96 16 19 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.70 4.97 -51.93 -0.26 0.45 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.62 7.23 -51.93 -0.38 0.25 16 25 H 0.03 0.81 7.01 -51.93 -0.36 0.45 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.10 2.05 6.62 -51.93 -0.34 1.70 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.72 6.66 -51.93 -0.35 0.37 16 31 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.04 0.60 6.30 -51.93 -0.33 0.28 16 LS Contribution 265.07 15.07 3.99 3.99 Total: -1.00 -32.67 265.07 -5.55 -38.22 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.35 Total: -3.01 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 0.54 Total: -13.88 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.77 Total: -27.85 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.84 Total: -15.33 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.67 -5.55 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535677651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.508 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds