Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99840 * 2 1 4 4 C 1.53001 * 109.46806 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.48212 * 301.84821 * 4 3 2 6 6 C 1.50700 * 109.46732 * 178.87509 * 5 4 3 7 7 H 1.07997 * 120.00626 * 0.37416 * 6 5 4 8 8 C 1.37879 * 119.99918 * 180.37079 * 6 5 4 9 9 N 1.31509 * 120.00260 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99756 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46910 * 89.99717 * 10 8 6 12 12 H 1.48498 * 109.46943 * 209.99611 * 10 8 6 13 13 H 1.48490 * 109.47049 * 329.99742 * 10 8 6 14 14 C 1.53092 * 109.47673 * 181.82595 * 4 3 2 15 15 C 1.53210 * 109.14945 * 297.61462 * 14 4 3 16 16 C 1.53174 * 109.04436 * 303.02845 * 15 14 4 17 17 C 1.53093 * 109.16565 * 56.97895 * 16 15 14 18 18 O 1.42907 * 109.47920 * 61.87313 * 4 3 2 19 19 H 1.09005 * 109.47171 * 59.99919 * 1 2 3 20 20 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47281 * 299.99960 * 1 2 3 22 22 H 1.09000 * 109.46963 * 300.00175 * 3 2 1 23 23 H 1.08995 * 109.46708 * 60.00033 * 3 2 1 24 24 H 1.08995 * 109.46944 * 298.87552 * 5 4 3 25 25 H 1.08999 * 109.47297 * 58.87728 * 5 4 3 26 26 H 0.97001 * 120.00101 * 180.02562 * 9 8 6 27 27 H 1.08991 * 109.52409 * 57.53010 * 14 4 3 28 28 H 1.09003 * 109.51821 * 177.72522 * 14 4 3 29 29 H 1.09004 * 109.53741 * 183.16224 * 15 14 4 30 30 H 1.09001 * 109.53830 * 62.89657 * 15 14 4 31 31 H 1.09007 * 109.52485 * 297.07657 * 16 15 14 32 32 H 1.08994 * 109.57600 * 176.92061 * 16 15 14 33 33 H 1.08998 * 109.48490 * 182.40650 * 17 16 15 34 34 H 1.09004 * 109.48003 * 62.36861 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9835 0.3859 1.2262 6 6 5.4837 0.2434 1.2119 7 1 6.0605 0.6841 0.4122 8 6 6.1200 -0.4496 2.2198 9 7 7.4291 -0.5745 2.2071 10 14 5.1224 -1.2126 3.6026 11 1 4.7391 -2.5981 3.2303 12 1 5.9375 -1.2410 4.8436 13 1 3.8977 -0.4052 3.8332 14 6 4.1582 2.5825 0.0466 15 6 3.7536 3.3547 -1.2132 16 6 4.1936 2.5623 -2.4480 17 6 3.5695 1.1652 -2.3974 18 8 3.9608 0.5137 -1.1872 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.6885 1.8464 -0.8900 23 1 1.6886 1.8464 0.8900 24 1 3.6768 0.9082 2.1323 25 1 3.5245 -0.6025 1.2035 26 1 7.8767 -1.0624 2.9159 27 1 3.8001 3.1119 0.9294 28 1 5.2441 2.4962 0.0879 29 1 4.2390 4.3306 -1.2143 30 1 2.6714 3.4841 -1.2296 31 1 5.2802 2.4756 -2.4571 32 1 3.8618 3.0770 -3.3496 33 1 3.9134 0.5823 -3.2518 34 1 2.4833 1.2510 -2.4291 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535677651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = -123.755204 kcal Electronic energy + Delta-G solvation = -15527.585494 eV Core-core repulsion = 13038.468816 eV Total energy + Delta-G solvation = -2489.116678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97628 -38.17558 -35.38372 -34.43893 -33.51995 -29.79700 -28.86290 -26.71670 -24.79985 -24.72093 -22.31347 -20.15892 -18.95326 -17.57987 -17.23616 -16.67407 -16.28334 -15.98277 -15.54864 -15.22684 -14.98018 -14.61170 -14.12225 -13.66339 -13.43824 -13.34588 -13.06169 -12.51468 -12.47857 -12.25765 -12.06484 -11.91388 -11.72297 -11.45458 -11.26235 -10.75288 -10.70897 -10.45051 -10.03200 -8.21098 -6.20822 1.35535 1.37761 1.48698 2.40084 2.80329 3.09086 3.29481 3.89135 3.98462 4.03920 4.07796 4.20861 4.32533 4.38999 4.55529 4.57452 4.59852 4.70221 4.85061 4.87020 4.90223 5.01469 5.06053 5.17335 5.24038 5.41050 5.44956 5.54933 5.71137 6.32651 6.36804 6.70872 6.87043 7.39783 8.95874 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.012185 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.497480 B = 2297.302777 C = 2961.585432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.132 3.868 5 C 0.004 3.996 6 C -0.498 4.498 7 H 0.037 0.963 8 C 0.000 4.000 9 N -0.955 5.955 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.247 1.247 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.151 4.151 17 C 0.046 3.954 18 O -0.386 6.386 19 H 0.054 0.946 20 H 0.091 0.909 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.033 0.967 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.987 7.414 -6.410 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.035 4.035 4 C 0.092 3.908 5 C -0.034 4.034 6 C -0.536 4.536 7 H 0.055 0.945 8 C -0.195 4.195 9 N -0.597 5.597 10 Si 0.768 3.232 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.170 1.170 14 C -0.172 4.172 15 C -0.155 4.155 16 C -0.189 4.189 17 C -0.030 4.030 18 O -0.306 6.306 19 H 0.073 0.927 20 H 0.110 0.890 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.644 7.014 -6.311 17.421 hybrid contribution 0.060 -0.258 0.669 0.720 sum -14.584 6.756 -5.642 17.035 Atomic orbital electron populations 1.22952 0.79935 1.03592 1.00866 1.88006 1.21121 1.28184 1.95467 1.23257 0.93706 0.85061 1.01500 1.21440 0.90509 0.92683 0.86125 1.19460 0.94897 0.95913 0.93082 1.21262 0.91782 1.32681 1.07888 0.94487 1.25922 0.95805 0.96812 1.00974 1.70066 1.09887 1.44462 1.35264 0.85752 0.79506 0.79411 0.78519 1.20131 1.20785 1.17049 1.22026 1.01170 0.94550 0.99427 1.21679 1.01912 0.98742 0.93140 1.22168 1.00799 0.96378 0.99564 1.22751 0.98844 0.93978 0.87462 1.88137 1.78199 1.50513 1.13750 0.92704 0.89009 0.93232 0.90900 0.91690 0.94929 0.96797 0.92831 0.90517 0.93011 0.90183 0.90040 0.93209 0.88207 0.89081 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -14.41 9.86 -141.38 -1.39 -15.80 16 3 C 0.04 1.34 4.16 71.98 0.30 1.64 16 4 C 0.13 5.45 0.53 -10.76 -0.01 5.45 16 5 C 0.00 0.19 3.17 29.85 0.09 0.28 16 6 C -0.50 -30.15 8.56 25.60 0.22 -29.94 16 7 H 0.04 2.48 6.95 -2.91 -0.02 2.46 16 8 C 0.00 0.01 5.47 84.66 0.46 0.48 16 9 N -0.95 -62.47 13.96 21.45 0.30 -62.17 16 10 Si 0.94 46.98 27.46 68.60 1.88 48.86 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 13 H -0.25 -11.35 6.55 99.48 0.65 -10.70 16 14 C -0.13 -4.93 4.72 30.70 0.14 -4.78 16 15 C -0.12 -3.14 5.72 30.72 0.18 -2.97 16 16 C -0.15 -4.16 6.14 30.68 0.19 -3.97 16 17 C 0.05 1.47 6.52 72.01 0.47 1.94 16 18 O -0.39 -17.27 9.70 -141.38 -1.37 -18.64 16 19 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 20 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.07 1.94 4.97 -2.39 -0.01 1.93 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.03 1.58 7.23 -2.39 -0.02 1.56 16 25 H 0.01 0.73 7.01 -2.39 -0.02 0.72 16 26 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.05 2.32 6.62 -2.39 -0.02 2.31 16 29 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 30 H 0.08 1.77 6.66 -2.39 -0.02 1.76 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.06 1.63 6.30 -2.39 -0.02 1.62 16 Total: -1.00 -73.91 265.07 3.72 -70.19 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.01 Total: 7.65 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.30 Total: -30.09 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.30 Total: -62.17 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -2.76 Total: -34.44 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.86 kcal Total: -73.91 3.72 -70.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535677651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.570 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds