Wall clock time and date at job start Mon Mar 30 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.62570 * 2 1 4 4 C 1.53233 * 109.63017 * 239.60658 * 2 1 3 5 5 N 1.46901 * 109.34140 * 186.45874 * 4 2 1 6 6 C 1.46894 * 111.00219 * 187.25818 * 5 4 2 7 7 C 1.53004 * 109.47084 * 301.74676 * 6 5 4 8 8 O 1.42895 * 109.47325 * 64.99547 * 7 6 5 9 9 C 1.46893 * 111.26760 * 63.10526 * 5 4 2 10 10 C 1.53243 * 109.34410 * 296.89664 * 9 5 4 11 11 N 1.47083 * 108.67733 * 53.73090 * 10 9 5 12 12 C 1.36940 * 120.87837 * 128.91761 * 11 10 9 13 13 H 1.07997 * 119.99882 * 222.28105 * 12 11 10 14 14 C 1.38811 * 119.99976 * 42.28339 * 12 11 10 15 15 N 1.31625 * 120.00071 * 214.76164 * 14 12 11 16 16 Si 1.86801 * 120.00470 * 34.76061 * 14 12 11 17 17 H 1.48501 * 109.47056 * 84.59190 * 16 14 12 18 18 H 1.48492 * 109.47376 * 204.59799 * 16 14 12 19 19 H 1.48507 * 109.46858 * 324.59605 * 16 14 12 20 20 H 1.09006 * 109.47062 * 180.39418 * 1 2 3 21 21 H 1.08999 * 109.47570 * 300.38632 * 1 2 3 22 22 H 1.08996 * 109.47172 * 60.39470 * 1 2 3 23 23 H 1.09004 * 109.49086 * 66.49941 * 4 2 1 24 24 H 1.08997 * 109.51623 * 306.43356 * 4 2 1 25 25 H 1.08997 * 109.47531 * 61.74457 * 6 5 4 26 26 H 1.08999 * 109.47188 * 181.74114 * 6 5 4 27 27 H 1.09004 * 109.47182 * 185.00464 * 7 6 5 28 28 H 1.09000 * 109.46802 * 304.99528 * 7 6 5 29 29 H 0.96703 * 113.99962 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.49456 * 176.93705 * 9 5 4 31 31 H 1.09004 * 109.49362 * 56.85934 * 9 5 4 32 32 H 1.08992 * 109.62907 * 173.53565 * 10 9 5 33 33 H 1.09002 * 109.62903 * 293.92730 * 10 9 5 34 34 H 0.96998 * 120.00248 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7302 -1.2449 5 7 3.5055 -0.8624 -1.1622 6 6 4.0569 -1.4021 -2.4122 7 6 3.4214 -2.7629 -2.7044 8 8 2.0240 -2.5933 -2.9497 9 6 3.9016 -1.6870 -0.0128 10 6 3.4629 -0.9960 1.2827 11 7 2.0246 -0.7010 1.1955 12 6 1.1688 -1.0730 2.1977 13 1 0.2057 -1.4974 1.9555 14 6 1.5392 -0.9047 3.5248 15 7 1.1563 -1.7792 4.4310 16 14 2.5810 0.5629 4.0250 17 1 1.7021 1.7365 4.2607 18 1 3.3229 0.2419 5.2705 19 1 3.5462 0.8772 2.9409 20 1 -0.3633 -1.0277 0.0071 21 1 -0.3634 0.5198 0.8865 22 1 -0.3633 0.5077 -0.8935 23 1 1.7810 -0.1603 -2.1359 24 1 1.5924 -1.7204 -1.2994 25 1 3.8396 -0.7164 -3.2311 26 1 5.1360 -1.5187 -2.3128 27 1 3.8938 -3.2035 -3.5824 28 1 3.5626 -3.4213 -1.8472 29 1 1.5557 -3.4170 -3.1430 30 1 4.9846 -1.8110 -0.0102 31 1 3.4234 -2.6639 -0.0840 32 1 3.6508 -1.6546 2.1306 33 1 4.0201 -0.0678 1.4095 34 1 1.4154 -1.6618 5.3583 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643407634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:05 Heat of formation + Delta-G solvation = -37.793776 kcal Electronic energy + Delta-G solvation = -15597.242378 eV Core-core repulsion = 13144.146018 eV Total energy + Delta-G solvation = -2453.096360 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28329 -37.84881 -35.84143 -34.07906 -32.87758 -30.45208 -28.32599 -26.85491 -24.71795 -23.79133 -21.95131 -20.78836 -18.38626 -18.34073 -17.23307 -16.52273 -16.27281 -16.04531 -15.59550 -15.18946 -14.74840 -14.35925 -13.93683 -13.64193 -13.37958 -13.26426 -12.76623 -12.63942 -12.58010 -12.40392 -12.13696 -11.90202 -11.71655 -11.51896 -11.32064 -10.69766 -10.47461 -9.11021 -8.51545 -8.25135 -5.51062 1.37106 1.43860 1.54926 2.48403 2.94398 3.05670 3.44642 3.53510 4.15006 4.22229 4.33146 4.35569 4.44378 4.52248 4.62377 4.63707 4.71471 4.83418 4.93139 5.01568 5.04167 5.13330 5.14999 5.23903 5.46379 5.60507 5.95038 6.24184 6.27977 6.34806 6.86475 7.04356 7.68102 8.23163 8.95244 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040669 B = 0.010351 C = 0.009713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.313293 B = 2704.314579 C = 2881.943165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.153 3.847 3 H 0.023 0.977 4 C 0.068 3.932 5 N -0.545 5.545 6 C 0.053 3.947 7 C 0.040 3.960 8 O -0.579 6.579 9 C 0.052 3.948 10 C 0.144 3.856 11 N -0.610 5.610 12 C -0.257 4.257 13 H 0.043 0.957 14 C 0.000 4.000 15 N -0.927 5.927 16 Si 0.903 3.097 17 H -0.294 1.294 18 H -0.299 1.299 19 H -0.248 1.248 20 H 0.039 0.961 21 H 0.041 0.959 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.385 0.615 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -0.672 -14.996 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.061 4.061 5 N -0.269 5.269 6 C -0.075 4.075 7 C -0.039 4.039 8 O -0.387 6.387 9 C -0.078 4.078 10 C 0.018 3.982 11 N -0.335 5.335 12 C -0.386 4.386 13 H 0.061 0.939 14 C -0.199 4.199 15 N -0.570 5.570 16 Si 0.730 3.270 17 H -0.221 1.221 18 H -0.226 1.226 19 H -0.172 1.172 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.374 0.369 -14.661 15.991 hybrid contribution -0.258 -0.794 0.774 1.138 sum 6.115 -0.425 -13.887 15.180 Atomic orbital electron populations 1.21624 0.94764 1.00867 1.00832 1.20961 0.93843 0.93580 0.86800 0.95971 1.22524 0.86859 1.00266 0.96469 1.62028 1.11904 1.49886 1.03072 1.22457 0.99660 0.93651 0.91745 1.22930 0.82228 0.99023 0.99718 1.86660 1.21343 1.37518 1.93212 1.22483 1.00007 0.94105 0.91181 1.21345 0.84405 0.96781 0.95650 1.44576 1.03713 1.66181 1.19055 1.18457 1.00724 1.34496 0.84927 0.93920 1.26093 0.99021 0.98839 0.95916 1.70160 1.49859 1.33942 1.03007 0.86397 0.79713 0.83288 0.77588 1.22128 1.22562 1.17171 0.94143 0.94033 0.90710 0.90976 0.92840 0.89905 0.87764 0.91118 0.94670 0.76545 0.89188 0.95943 0.93593 0.95655 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 8.07 71.98 0.58 -4.27 16 2 C 0.15 6.46 3.65 44.95 0.16 6.62 16 3 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 4 C 0.07 2.41 3.61 86.38 0.31 2.72 16 5 N -0.55 -17.96 4.83 -895.27 -4.32 -22.28 16 6 C 0.05 1.27 5.92 86.31 0.51 1.78 16 7 C 0.04 0.88 6.87 71.98 0.49 1.37 16 8 O -0.58 -14.09 10.13 -148.98 -1.51 -15.60 16 9 C 0.05 1.83 5.17 86.39 0.45 2.27 16 10 C 0.14 6.41 4.80 86.35 0.41 6.82 16 11 N -0.61 -29.97 2.49 -674.15 -1.68 -31.65 16 12 C -0.26 -14.67 8.45 84.03 0.71 -13.96 16 13 H 0.04 2.67 6.90 -2.91 -0.02 2.65 16 14 C 0.00 0.01 4.87 84.86 0.41 0.42 16 15 N -0.93 -57.73 13.97 21.65 0.30 -57.43 16 16 Si 0.90 46.09 27.52 68.60 1.89 47.98 16 17 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 18 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 19 H -0.25 -12.06 5.24 99.48 0.52 -11.54 16 20 H 0.04 1.67 7.50 -2.38 -0.02 1.66 16 21 H 0.04 1.78 7.69 -2.39 -0.02 1.76 16 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.07 2.38 8.11 -2.38 -0.02 2.36 16 24 H 0.05 2.04 5.70 -2.39 -0.01 2.03 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 2.04 8.05 -2.39 -0.02 2.02 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 0.86 6.49 -2.39 -0.02 0.84 16 29 H 0.39 6.37 9.12 -74.06 -0.68 5.69 16 30 H 0.09 2.64 8.04 -2.38 -0.02 2.62 16 31 H 0.02 0.84 6.73 -2.38 -0.02 0.83 16 32 H 0.05 2.20 7.28 -2.39 -0.02 2.19 16 33 H 0.03 1.16 6.59 -2.39 -0.02 1.14 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -67.70 258.87 -1.06 -68.76 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.22 Total: 6.45 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 4.05 Total: 3.78 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -5.70 Total: -111.36 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.51 Total: -15.60 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.89 Total: 47.98 kcal Total: -67.70 -1.06 -68.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643407634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.965 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds