Wall clock time and date at job start Mon Mar 30 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.62601 * 2 1 4 4 C 1.53244 * 109.62571 * 120.58158 * 2 1 3 5 5 N 1.46901 * 109.33904 * 173.54178 * 4 2 1 6 6 C 1.46896 * 111.00060 * 172.74440 * 5 4 2 7 7 C 1.53004 * 109.46940 * 190.34688 * 6 5 4 8 8 O 1.42894 * 109.47026 * 65.00228 * 7 6 5 9 9 C 1.46905 * 111.26817 * 296.89500 * 5 4 2 10 10 C 1.53241 * 109.33885 * 63.10023 * 9 5 4 11 11 N 1.47075 * 108.52402 * 306.17135 * 10 9 5 12 12 C 1.36939 * 120.88203 * 231.16048 * 11 10 9 13 13 H 1.07997 * 119.99511 * 152.47037 * 12 11 10 14 14 C 1.38809 * 119.99884 * 332.47326 * 12 11 10 15 15 N 1.31621 * 119.99899 * 160.36194 * 14 12 11 16 16 Si 1.86799 * 120.00362 * 340.36501 * 14 12 11 17 17 H 1.48501 * 109.47049 * 94.25832 * 16 14 12 18 18 H 1.48497 * 109.47315 * 214.25855 * 16 14 12 19 19 H 1.48499 * 109.46759 * 334.26534 * 16 14 12 20 20 H 1.09001 * 109.47262 * 180.39124 * 1 2 3 21 21 H 1.09003 * 109.47384 * 300.38699 * 1 2 3 22 22 H 1.08999 * 109.47179 * 60.39183 * 1 2 3 23 23 H 1.08998 * 109.49557 * 53.57864 * 4 2 1 24 24 H 1.09004 * 109.49069 * 293.49722 * 4 2 1 25 25 H 1.09003 * 109.46925 * 70.34737 * 6 5 4 26 26 H 1.09000 * 109.47149 * 310.34192 * 6 5 4 27 27 H 1.09000 * 109.46891 * 305.00070 * 7 6 5 28 28 H 1.09003 * 109.46685 * 184.99883 * 7 6 5 29 29 H 0.96703 * 113.99756 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.49198 * 183.06654 * 9 5 4 31 31 H 1.08999 * 109.48602 * 303.11677 * 9 5 4 32 32 H 1.08995 * 109.62527 * 65.88480 * 10 9 5 33 33 H 1.08998 * 109.62491 * 186.45660 * 10 9 5 34 34 H 0.96998 * 120.00610 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7344 1.2426 5 7 3.5054 -0.8663 1.1595 6 6 4.0567 -1.4102 2.4078 7 6 5.5821 -1.2935 2.3850 8 8 5.9542 0.0862 2.3769 9 6 3.9016 -1.6871 0.0074 10 6 3.4629 -0.9919 -1.2858 11 7 2.0241 -0.7009 -1.1949 12 6 1.1672 -1.0721 -2.1966 13 1 0.1299 -1.2727 -1.9730 14 6 1.6321 -1.1906 -3.4991 15 7 0.9542 -1.8980 -4.3780 16 14 3.2198 -0.3462 -4.0048 17 1 4.3508 -1.2996 -3.8741 18 1 3.1130 0.1048 -5.4156 19 1 3.4577 0.8273 -3.1264 20 1 -0.3634 -1.0276 0.0070 21 1 -0.3634 0.5198 0.8865 22 1 -0.3633 0.5077 -0.8935 23 1 1.5923 -1.7247 1.2934 24 1 1.7810 -0.1674 2.1355 25 1 3.7739 -2.4585 2.5036 26 1 3.6620 -0.8484 3.2544 27 1 5.9704 -1.7798 1.4902 28 1 5.9967 -1.7764 3.2700 29 1 6.9095 0.2358 2.3621 30 1 4.9845 -1.8112 0.0044 31 1 3.4237 -2.6644 0.0756 32 1 4.0176 -0.0616 -1.4077 33 1 3.6509 -1.6476 -2.1360 34 1 1.2787 -1.9806 -5.2883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643407635.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:08 Heat of formation + Delta-G solvation = -38.765199 kcal Electronic energy + Delta-G solvation = -15388.546113 eV Core-core repulsion = 12935.407629 eV Total energy + Delta-G solvation = -2453.138484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19888 -37.86466 -36.06814 -34.10583 -33.04466 -30.55486 -28.60940 -26.83486 -24.74933 -24.03435 -21.72341 -21.00388 -18.54758 -18.19395 -17.58679 -16.48524 -16.37599 -16.12505 -15.51270 -15.23468 -14.83301 -14.39880 -14.28497 -13.84679 -13.54882 -13.09920 -13.05253 -12.76960 -12.43354 -12.28561 -12.11028 -11.89716 -11.71539 -11.49219 -11.22748 -10.77855 -10.70583 -9.29198 -8.85039 -8.13767 -5.45271 1.28222 1.40602 1.50620 2.42907 2.88305 3.08701 3.30971 3.51084 4.09157 4.11483 4.14829 4.31803 4.40397 4.48699 4.49121 4.53694 4.59502 4.74243 4.79424 4.80956 4.88551 4.93568 5.01330 5.06733 5.36327 5.48918 5.87872 6.13339 6.16516 6.25878 6.92118 7.04432 7.64690 8.08063 9.05804 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.010738 C = 0.008996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.871143 B = 2606.828568 C = 3111.814386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.033 0.967 4 C 0.058 3.942 5 N -0.539 5.539 6 C 0.049 3.951 7 C 0.081 3.919 8 O -0.583 6.583 9 C 0.052 3.948 10 C 0.127 3.873 11 N -0.620 5.620 12 C -0.238 4.238 13 H 0.068 0.932 14 C -0.037 4.037 15 N -0.959 5.959 16 Si 0.941 3.059 17 H -0.276 1.276 18 H -0.312 1.312 19 H -0.268 1.268 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.042 0.958 23 H 0.024 0.976 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.390 0.610 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.158 1.245 15.163 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.059 3.941 3 H 0.050 0.950 4 C -0.071 4.071 5 N -0.264 5.264 6 C -0.078 4.078 7 C 0.003 3.997 8 O -0.390 6.390 9 C -0.077 4.077 10 C 0.002 3.998 11 N -0.345 5.345 12 C -0.367 4.367 13 H 0.086 0.914 14 C -0.231 4.231 15 N -0.606 5.606 16 Si 0.771 3.229 17 H -0.203 1.203 18 H -0.241 1.241 19 H -0.193 1.193 20 H 0.061 0.939 21 H 0.101 0.899 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.238 0.762 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.686 1.746 14.983 17.407 hybrid contribution 0.730 -0.689 -0.907 1.353 sum 9.416 1.057 14.076 16.968 Atomic orbital electron populations 1.21718 0.94220 1.01198 1.01524 1.20779 0.94031 0.93765 0.85486 0.94972 1.22513 0.87025 0.98929 0.98677 1.61852 1.10816 1.50775 1.02963 1.22272 0.95028 0.98430 0.92070 1.22258 0.94050 0.82898 1.00465 1.86571 1.29462 1.25286 1.97674 1.22479 1.00340 0.93887 0.91018 1.21388 0.84763 0.97192 0.96472 1.44711 1.03331 1.66677 1.19810 1.18956 0.93911 1.37353 0.86529 0.91444 1.25854 1.00988 1.00304 0.95997 1.69939 1.42874 1.42781 1.05022 0.85979 0.81071 0.80149 0.75659 1.20316 1.24068 1.19251 0.93869 0.89874 0.93836 0.95737 0.88834 0.92838 0.89679 0.93702 0.90806 0.76184 0.89208 0.95719 0.95442 0.92937 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 7.94 71.98 0.57 -4.23 16 2 C 0.16 6.71 3.66 44.96 0.16 6.87 16 3 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.06 1.95 4.91 86.38 0.42 2.37 16 5 N -0.54 -17.86 4.58 -895.22 -4.10 -21.95 16 6 C 0.05 1.22 5.35 86.31 0.46 1.69 16 7 C 0.08 1.67 7.11 71.98 0.51 2.18 16 8 O -0.58 -13.65 13.61 -148.98 -2.03 -15.67 16 9 C 0.05 1.88 5.47 86.38 0.47 2.36 16 10 C 0.13 5.74 4.34 86.35 0.37 6.12 16 11 N -0.62 -30.43 2.81 -674.31 -1.89 -32.32 16 12 C -0.24 -13.66 9.14 84.03 0.77 -12.89 16 13 H 0.07 4.12 6.38 -2.91 -0.02 4.10 16 14 C -0.04 -2.23 5.25 84.86 0.45 -1.78 16 15 N -0.96 -61.22 13.97 21.65 0.30 -60.92 16 16 Si 0.94 48.34 24.32 68.60 1.67 50.01 16 17 H -0.28 -13.38 6.70 99.48 0.67 -12.71 16 18 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 19 H -0.27 -13.55 6.42 99.48 0.64 -12.91 16 20 H 0.04 1.69 7.59 -2.39 -0.02 1.67 16 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.04 1.80 7.53 -2.39 -0.02 1.78 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 2.63 7.99 -2.38 -0.02 2.61 16 25 H 0.05 1.22 8.12 -2.39 -0.02 1.20 16 26 H 0.08 1.98 7.96 -2.39 -0.02 1.96 16 27 H 0.04 0.93 6.21 -2.39 -0.01 0.91 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.39 5.30 9.12 -74.06 -0.68 4.63 16 30 H 0.09 2.78 6.09 -2.39 -0.01 2.76 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.03 1.28 6.81 -2.39 -0.02 1.26 16 33 H 0.05 2.56 4.74 -2.39 -0.01 2.55 16 34 H 0.26 15.82 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -70.74 260.22 -1.55 -72.29 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.30 Total: 5.88 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.19 Total: 2.68 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -5.69 Total: -115.19 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -2.03 Total: -15.67 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.67 Total: 50.01 kcal Total: -70.74 -1.55 -72.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643407635.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.526 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds