Wall clock time and date at job start Mon Mar 30 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37655 * 125.83216 * 2 1 4 4 S 1.76202 * 125.67778 * 0.22901 * 3 2 1 5 5 C 1.80994 * 100.00038 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47061 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99888 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99915 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 119.99840 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46865 * 90.00405 * 10 8 6 12 12 H 1.48505 * 109.46994 * 209.99947 * 10 8 6 13 13 H 1.48494 * 109.47621 * 329.99981 * 10 8 6 14 14 N 1.30184 * 108.64339 * 180.26211 * 3 2 1 15 15 N 1.40167 * 108.03419 * 0.02562 * 14 3 2 16 16 H 0.96994 * 126.29502 * 180.02562 * 15 14 3 17 17 C 1.34794 * 125.83157 * 180.30836 * 2 1 3 18 18 O 1.21829 * 126.20869 * 359.73433 * 17 2 1 19 19 H 1.08996 * 109.46969 * 179.72157 * 1 2 3 20 20 H 1.08998 * 109.46468 * 299.71426 * 1 2 3 21 21 H 1.08995 * 109.46994 * 59.71411 * 1 2 3 22 22 H 1.09003 * 109.47446 * 299.99658 * 5 4 3 23 23 H 1.09000 * 109.47197 * 60.00035 * 5 4 3 24 24 H 0.96996 * 119.99861 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2709 1.1160 0.0000 4 16 1.7121 2.7871 0.0057 5 6 3.3029 3.6504 0.0034 6 6 3.0666 5.1388 0.0071 7 1 2.0582 5.5255 0.0101 8 6 4.1379 6.0069 0.0067 9 7 3.9317 7.3058 0.0104 10 14 5.8820 5.3380 0.0022 11 1 6.3415 5.1634 -1.3992 12 1 6.7796 6.2916 0.7023 13 1 5.9114 4.0274 0.6997 14 7 3.5146 0.7313 -0.0056 15 7 3.5353 -0.6702 -0.0101 16 1 4.3254 -1.2328 -0.0143 17 6 2.2541 -1.0928 -0.0059 18 8 1.8785 -2.2518 -0.0076 19 1 -0.3633 -1.0276 -0.0050 20 1 -0.3632 0.5094 0.8926 21 1 -0.3633 0.5182 -0.8874 22 1 3.8698 3.3700 0.8911 23 1 3.8648 3.3744 -0.8889 24 1 4.6853 7.9164 0.0105 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057440015.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:38 Heat of formation + Delta-G solvation = 35.108313 kcal Electronic energy + Delta-G solvation = -11967.603433 eV Core-core repulsion = 9623.329116 eV Total energy + Delta-G solvation = -2344.274317 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.047 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.12195 -37.11090 -34.70924 -33.21270 -30.60526 -29.42008 -27.33280 -23.51129 -22.75769 -21.21782 -18.60843 -17.03876 -16.66208 -16.31366 -15.95816 -15.32486 -14.35405 -13.72078 -13.58568 -13.17874 -12.72343 -12.53921 -12.35107 -11.84223 -11.05701 -10.88851 -10.46114 -10.42236 -10.18028 -9.98612 -9.50419 -8.91837 -8.77514 -7.27490 -6.32123 -4.38363 1.47008 1.97596 2.07377 2.76746 3.02139 3.19269 3.28186 3.31164 3.83682 4.22653 4.68055 5.00568 5.20668 5.25077 5.52539 5.91910 6.18035 6.48850 6.52545 6.82613 7.21223 7.60731 8.09275 8.19083 8.63979 9.22296 10.78779 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.054069 B = 0.008209 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.728537 B = 3410.238865 C = 3907.520193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.542 5.542 3 C 0.258 3.742 4 S 0.014 5.986 5 C 0.025 3.975 6 C -0.529 4.529 7 H 0.086 0.914 8 C 0.088 3.912 9 N -0.885 5.885 10 Si 0.876 3.124 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.259 1.259 14 N -0.289 5.289 15 N -0.549 5.549 16 H 0.452 0.548 17 C 0.650 3.350 18 O -0.569 6.569 19 H 0.094 0.906 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -10.779 0.002 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.272 5.272 3 C -0.127 4.127 4 S 0.241 5.759 5 C -0.124 4.124 6 C -0.568 4.568 7 H 0.104 0.896 8 C -0.118 4.118 9 N -0.521 5.521 10 Si 0.701 3.299 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.183 1.183 14 N -0.120 5.120 15 N -0.299 5.299 16 H 0.300 0.700 17 C 0.347 3.653 18 O -0.444 6.444 19 H 0.113 0.887 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.877 -10.681 0.007 11.363 hybrid contribution 1.914 -1.220 -0.030 2.270 sum -1.963 -11.900 -0.023 12.061 Atomic orbital electron populations 1.21884 0.74028 1.04905 1.03954 1.45620 1.08693 1.04994 1.67859 1.26860 0.88747 0.97400 0.99647 1.85926 1.17042 0.82926 1.90024 1.21790 0.89687 0.99175 1.01721 1.20330 0.96082 0.85729 1.54698 0.89616 1.24778 0.99058 0.94494 0.93514 1.69842 1.32187 1.01728 1.48324 0.86822 0.84137 0.79705 0.79191 1.19680 1.20722 1.18348 1.77694 1.15534 0.90441 1.28343 1.46558 1.07545 1.04723 1.71087 0.70016 1.16763 0.82505 0.84787 0.81283 1.91075 1.77992 1.15167 1.60210 0.88697 0.89929 0.89929 0.92735 0.93206 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.85 59.85 0.65 1.71 14 2 N -0.54 -8.46 3.15 -128.84 -0.41 -8.87 14 3 C 0.26 4.49 8.02 -88.20 -0.71 3.78 14 4 S 0.01 0.25 21.84 -107.50 -2.35 -2.10 14 5 C 0.02 0.55 4.01 36.01 0.14 0.69 14 6 C -0.53 -13.79 9.68 -34.44 -0.33 -14.12 14 7 H 0.09 2.39 7.95 -52.49 -0.42 1.98 14 8 C 0.09 2.36 5.47 -17.82 -0.10 2.26 14 9 N -0.88 -25.21 13.96 55.43 0.77 -24.44 14 10 Si 0.88 20.07 27.47 -169.99 -4.67 15.40 14 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 13 H -0.26 -5.77 6.54 56.52 0.37 -5.40 14 14 N -0.29 -5.25 11.98 30.72 0.37 -4.88 14 15 N -0.55 -8.68 7.39 27.70 0.20 -8.47 14 16 H 0.45 5.65 8.96 -182.55 -1.64 4.01 14 17 C 0.65 11.04 9.00 -86.79 -0.78 10.26 14 18 O -0.57 -10.74 17.62 5.07 0.09 -10.65 14 19 H 0.09 0.99 7.73 -51.93 -0.40 0.59 14 20 H 0.08 0.80 8.14 -51.93 -0.42 0.38 14 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 14 22 H 0.05 1.22 7.20 -51.91 -0.37 0.85 14 23 H 0.05 1.10 7.57 -51.92 -0.39 0.71 14 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 14 LS Contribution 235.20 15.07 3.54 3.54 Total: -1.00 -30.47 235.20 -6.80 -37.27 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.23 Total: -1.39 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.13 Total: 4.58 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.94 Total: -46.66 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.35 Total: -2.10 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.47 -6.80 -37.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057440015.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds