Wall clock time and date at job start Mon Mar 30 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37655 * 125.83216 * 2 1 4 4 S 1.76202 * 125.67778 * 0.22901 * 3 2 1 5 5 C 1.80994 * 100.00038 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47061 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99888 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99915 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 119.99840 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46865 * 90.00405 * 10 8 6 12 12 H 1.48505 * 109.46994 * 209.99947 * 10 8 6 13 13 H 1.48494 * 109.47621 * 329.99981 * 10 8 6 14 14 N 1.30184 * 108.64339 * 180.26211 * 3 2 1 15 15 N 1.40167 * 108.03419 * 0.02562 * 14 3 2 16 16 H 0.96994 * 126.29502 * 180.02562 * 15 14 3 17 17 C 1.34794 * 125.83157 * 180.30836 * 2 1 3 18 18 O 1.21829 * 126.20869 * 359.73433 * 17 2 1 19 19 H 1.08996 * 109.46969 * 179.72157 * 1 2 3 20 20 H 1.08998 * 109.46468 * 299.71426 * 1 2 3 21 21 H 1.08995 * 109.46994 * 59.71411 * 1 2 3 22 22 H 1.09003 * 109.47446 * 299.99658 * 5 4 3 23 23 H 1.09000 * 109.47197 * 60.00035 * 5 4 3 24 24 H 0.96996 * 119.99861 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2709 1.1160 0.0000 4 16 1.7121 2.7871 0.0057 5 6 3.3029 3.6504 0.0034 6 6 3.0666 5.1388 0.0071 7 1 2.0582 5.5255 0.0101 8 6 4.1379 6.0069 0.0067 9 7 3.9317 7.3058 0.0104 10 14 5.8820 5.3380 0.0022 11 1 6.3415 5.1634 -1.3992 12 1 6.7796 6.2916 0.7023 13 1 5.9114 4.0274 0.6997 14 7 3.5146 0.7313 -0.0056 15 7 3.5353 -0.6702 -0.0101 16 1 4.3254 -1.2328 -0.0143 17 6 2.2541 -1.0928 -0.0059 18 8 1.8785 -2.2518 -0.0076 19 1 -0.3633 -1.0276 -0.0050 20 1 -0.3632 0.5094 0.8926 21 1 -0.3633 0.5182 -0.8874 22 1 3.8698 3.3700 0.8911 23 1 3.8648 3.3744 -0.8889 24 1 4.6853 7.9164 0.0105 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057440015.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:38 Heat of formation + Delta-G solvation = 14.131197 kcal Electronic energy + Delta-G solvation = -11968.513069 eV Core-core repulsion = 9623.329116 eV Total energy + Delta-G solvation = -2345.183953 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.047 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.42411 -38.48454 -35.91423 -35.20554 -32.05841 -31.22855 -28.38744 -25.03660 -24.48191 -22.53263 -19.95668 -18.98284 -17.93276 -17.73366 -17.22128 -16.67853 -16.21742 -15.41981 -14.90122 -14.55322 -14.38882 -13.80771 -13.67324 -13.14735 -12.78831 -12.65541 -12.26127 -11.81058 -11.61568 -11.56996 -11.31051 -10.87074 -10.17062 -8.71953 -8.36797 -6.47480 0.02469 0.60822 0.84177 1.37091 1.39967 1.45747 1.48553 1.53646 2.31825 2.60661 2.97954 3.50714 4.05943 4.43184 4.68388 4.70646 4.72523 4.79017 4.98073 5.28615 5.67390 6.02781 6.28341 6.56915 6.92634 7.16994 8.77436 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.054069 B = 0.008209 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.728537 B = 3410.238865 C = 3907.520193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.536 5.536 3 C 0.253 3.747 4 S 0.051 5.949 5 C 0.017 3.983 6 C -0.532 4.532 7 H 0.055 0.945 8 C 0.033 3.967 9 N -0.931 5.931 10 Si 0.938 3.062 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.246 1.246 14 N -0.307 5.307 15 N -0.536 5.536 16 H 0.464 0.536 17 C 0.645 3.355 18 O -0.590 6.590 19 H 0.103 0.897 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -12.155 -0.010 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.265 5.265 3 C -0.132 4.132 4 S 0.278 5.722 5 C -0.132 4.132 6 C -0.571 4.571 7 H 0.073 0.927 8 C -0.169 4.169 9 N -0.569 5.569 10 Si 0.761 3.239 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.170 1.170 14 N -0.139 5.139 15 N -0.288 5.288 16 H 0.314 0.686 17 C 0.341 3.659 18 O -0.467 6.467 19 H 0.122 0.878 20 H 0.118 0.882 21 H 0.118 0.882 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.644 -12.066 -0.004 12.605 hybrid contribution 1.723 -0.828 -0.027 1.912 sum -1.921 -12.894 -0.031 13.036 Atomic orbital electron populations 1.22278 0.71668 1.06146 1.05738 1.45845 1.10046 1.03856 1.66717 1.26675 0.89098 0.97441 0.99990 1.85692 1.13365 0.82745 1.90354 1.21563 0.92549 0.97336 1.01709 1.20519 0.94811 0.88092 1.53728 0.92662 1.25651 1.03383 0.94628 0.93198 1.69969 1.33571 1.03206 1.50134 0.85828 0.78997 0.79496 0.79574 1.18942 1.20473 1.17000 1.77642 1.16101 0.91546 1.28593 1.46603 1.07987 1.04024 1.70179 0.68552 1.16849 0.82830 0.84761 0.81440 1.91064 1.78321 1.15944 1.61365 0.87795 0.88178 0.88176 0.92739 0.92930 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 10.85 127.77 1.39 3.00 14 2 N -0.54 -15.39 3.15 -679.68 -2.14 -17.53 14 3 C 0.25 8.21 8.02 179.50 1.44 9.65 14 4 S 0.05 1.77 21.84 -56.49 -1.23 0.53 14 5 C 0.02 0.75 4.01 71.24 0.29 1.03 14 6 C -0.53 -27.78 9.68 25.60 0.25 -27.53 14 7 H 0.06 3.15 7.95 -2.91 -0.02 3.12 14 8 C 0.03 1.79 5.47 84.66 0.46 2.25 14 9 N -0.93 -53.79 13.96 21.45 0.30 -53.49 14 10 Si 0.94 40.78 27.47 68.60 1.88 42.66 14 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 14 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 14 13 H -0.25 -10.12 6.54 99.48 0.65 -9.47 14 14 N -0.31 -10.45 11.98 -56.73 -0.68 -11.13 14 15 N -0.54 -15.79 7.39 -184.36 -1.36 -17.15 14 16 H 0.46 10.64 8.96 -213.28 -1.91 8.73 14 17 C 0.64 20.52 9.00 179.01 1.61 22.13 14 18 O -0.59 -21.16 17.62 -4.76 -0.08 -21.24 14 19 H 0.10 1.90 7.73 -2.39 -0.02 1.88 14 20 H 0.10 1.64 8.14 -2.39 -0.02 1.62 14 21 H 0.10 1.64 8.14 -2.39 -0.02 1.62 14 22 H 0.05 2.34 7.20 -2.39 -0.02 2.33 14 23 H 0.05 2.23 7.57 -2.40 -0.02 2.21 14 24 H 0.27 14.72 8.31 -92.71 -0.77 13.95 14 Total: -1.00 -63.87 235.20 1.38 -62.49 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -0.73 Total: 4.32 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.43 Total: 10.54 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.88 Total: -99.30 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.08 Total: -21.24 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.88 Total: 42.66 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.23 Total: 0.53 kcal Total: -63.87 1.38 -62.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057440015.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.621 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds