Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35445 * 116.99761 * 2 1 4 4 N 1.31445 * 127.49337 * 179.97438 * 3 2 1 5 5 C 1.31288 * 116.84011 * 180.02562 * 4 3 2 6 6 C 1.50701 * 121.07036 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47595 * 345.00335 * 6 5 4 8 8 N 1.46904 * 109.47403 * 225.00054 * 6 5 4 9 9 C 1.50710 * 109.47056 * 105.00244 * 6 5 4 10 10 H 1.08003 * 119.99645 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00040 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99944 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 119.99953 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.46927 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47093 * 119.99782 * 13 11 9 16 16 H 1.48501 * 109.47135 * 239.99993 * 13 11 9 17 17 N 1.30136 * 117.85651 * 0.02562 * 5 4 3 18 18 S 1.69946 * 105.73209 * 359.73409 * 17 5 4 19 19 H 1.08999 * 109.47144 * 59.99673 * 1 2 3 20 20 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47352 * 299.99649 * 1 2 3 22 22 H 1.00900 * 110.99710 * 299.99961 * 8 6 5 23 23 H 1.00897 * 110.99335 * 63.95710 * 8 6 5 24 24 H 0.97002 * 119.99899 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 7 3.3363 1.4463 0.0005 5 6 3.7058 2.7061 0.0009 6 6 5.1633 3.0892 0.0009 7 1 5.7671 2.2214 0.2664 8 7 5.3881 4.1605 0.9806 9 6 5.5555 3.5731 -1.3715 10 1 4.8226 3.6001 -2.1644 11 6 6.8500 3.9804 -1.6150 12 7 7.7427 3.9460 -0.6498 13 14 7.3363 4.5795 -3.3162 14 1 6.1578 4.5194 -4.2177 15 1 7.8215 5.9802 -3.2277 16 1 8.4162 3.7146 -3.8557 17 7 2.7728 3.6134 0.0013 18 16 1.3021 2.7620 -0.0064 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 4.8391 4.9767 0.7561 23 1 5.1937 3.8402 1.9174 24 1 8.6534 4.2329 -0.8211 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259815912.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = 32.807187 kcal Electronic energy + Delta-G solvation = -12137.180978 eV Core-core repulsion = 9792.806877 eV Total energy + Delta-G solvation = -2344.374101 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.047 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.95506 -38.67905 -34.27944 -31.73755 -30.67015 -27.92974 -26.55543 -24.70686 -22.20304 -19.38319 -18.97401 -17.36515 -16.60216 -16.22397 -15.13901 -14.71619 -14.24090 -14.00237 -13.58576 -12.71817 -12.43893 -11.88543 -11.77131 -11.22069 -10.96000 -10.81039 -10.65413 -9.98414 -9.51241 -9.28865 -9.26231 -8.49528 -8.44199 -7.34076 -5.93316 -4.07788 0.95064 1.18221 1.99869 2.63874 3.22700 3.34234 3.41723 3.47018 4.46579 4.74109 4.81060 4.96897 5.17873 5.34776 6.02648 6.20566 6.37562 6.64756 7.22499 7.85272 7.99295 8.18997 8.53418 8.91588 9.02186 9.59344 11.11899 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.049847 B = 0.008252 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.586262 B = 3392.252663 C = 3508.668439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.262 6.262 3 C 0.270 3.730 4 N -0.516 5.516 5 C 0.298 3.702 6 C 0.304 3.696 7 H 0.073 0.927 8 N -0.796 5.796 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.086 3.914 12 N -0.844 5.844 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.283 1.283 17 N -0.459 5.459 18 S 0.102 5.898 19 H 0.067 0.933 20 H 0.118 0.882 21 H 0.067 0.933 22 H 0.330 0.670 23 H 0.300 0.700 24 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.761 -5.267 2.078 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.166 6.166 3 C -0.057 4.057 4 N -0.251 5.251 5 C 0.008 3.992 6 C 0.188 3.812 7 H 0.091 0.909 8 N -0.321 5.321 9 C -0.568 4.568 10 H 0.073 0.927 11 C -0.122 4.122 12 N -0.478 5.478 13 Si 0.721 3.279 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.209 1.209 17 N -0.290 5.290 18 S 0.234 5.766 19 H 0.086 0.914 20 H 0.136 0.864 21 H 0.085 0.915 22 H 0.143 0.857 23 H 0.111 0.889 24 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.310 -4.418 1.907 14.153 hybrid contribution -0.456 -0.432 -0.758 0.984 sum -13.766 -4.851 1.149 14.641 Atomic orbital electron populations 1.23504 0.75631 1.05542 1.02806 1.85867 1.22255 1.21065 1.87413 1.27048 0.92453 0.90927 0.95260 1.67299 1.11109 1.21718 1.25000 1.26236 1.02968 0.80916 0.89098 1.18302 0.76211 0.92548 0.94149 0.90908 1.59266 1.62650 1.07607 1.02568 1.20666 0.95733 1.47280 0.93081 0.92708 1.24885 0.96124 0.94621 0.96543 1.70104 1.02818 1.43979 1.30925 0.86542 0.78473 0.78506 0.84423 1.19918 1.20826 1.20880 1.77841 0.95207 1.24119 1.31840 1.84855 1.21860 0.97922 1.71940 0.91421 0.86353 0.91462 0.85720 0.88922 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.36 101.05 1.05 1.23 14 2 O -0.26 -3.84 10.55 -18.03 -0.19 -4.03 14 3 C 0.27 4.89 8.62 52.60 0.45 5.35 14 4 N -0.52 -11.48 10.59 -15.37 -0.16 -11.64 14 5 C 0.30 6.98 6.42 -159.03 -1.02 5.96 14 6 C 0.30 7.89 3.09 -70.01 -0.22 7.68 14 7 H 0.07 2.04 8.14 -51.93 -0.42 1.62 14 8 N -0.80 -19.33 8.50 -6.64 -0.06 -19.39 14 9 C -0.53 -14.93 8.71 -34.44 -0.30 -15.23 14 10 H 0.05 1.59 7.74 -52.48 -0.41 1.18 14 11 C 0.09 2.42 5.39 -17.82 -0.10 2.32 14 12 N -0.84 -24.48 12.77 55.43 0.71 -23.77 14 13 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 14 14 H -0.27 -6.65 7.11 56.52 0.40 -6.24 14 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 14 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 14 17 N -0.46 -10.05 11.67 29.50 0.34 -9.71 14 18 S 0.10 1.72 22.83 -107.50 -2.45 -0.74 14 19 H 0.07 0.52 8.11 -51.93 -0.42 0.09 14 20 H 0.12 0.63 8.14 -51.93 -0.42 0.21 14 21 H 0.07 0.49 8.12 -51.93 -0.42 0.07 14 22 H 0.33 7.90 8.61 -39.29 -0.34 7.57 14 23 H 0.30 6.53 9.06 -39.29 -0.36 6.17 14 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 14 LS Contribution 236.60 15.07 3.57 3.57 Total: -1.00 -31.76 236.60 -5.32 -37.08 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -1.92 Total: 4.72 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.13 Total: 7.30 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 0.83 Total: -64.50 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.19 Total: -4.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.45 Total: -0.74 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.76 -5.32 -37.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815912.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.888 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds