Wall clock time and date at job start Mon Mar 30 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 S 1.81391 * 109.47235 * 180.02562 * 10 9 7 12 12 C 1.76193 * 103.00267 * 180.02562 * 11 10 9 13 13 N 1.31150 * 126.02350 * 0.02562 * 12 11 10 14 14 N 1.40106 * 107.93922 * 179.97438 * 13 12 11 15 15 C 1.30864 * 108.00818 * 0.02562 * 14 13 12 16 16 O 1.35654 * 125.95999 * 180.02562 * 15 14 13 17 17 N 1.36494 * 108.07011 * 359.77103 * 15 14 13 18 18 H 0.96992 * 125.98182 * 180.23703 * 17 15 14 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 23 23 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 24 24 H 0.96692 * 114.00222 * 89.96943 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 6 2.6271 -6.4346 -0.0004 13 7 3.9146 -6.1849 0.0010 14 7 4.5921 -7.4113 0.0018 15 6 3.6983 -8.3672 0.0003 16 8 3.9563 -9.6990 0.0009 17 7 2.4613 -7.7902 0.0037 18 1 1.6131 -8.2607 0.0068 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6042 -0.8905 23 1 2.8721 -3.6043 0.8895 24 1 4.0300 -10.0849 0.8844 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308076948.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:35 Heat of formation + Delta-G solvation = 27.662696 kcal Electronic energy + Delta-G solvation = -11485.925904 eV Core-core repulsion = 9141.328721 eV Total energy + Delta-G solvation = -2344.597183 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.91139 -37.77944 -33.81808 -32.85608 -31.01699 -30.22146 -25.35288 -22.89077 -22.47053 -21.15472 -19.77761 -17.81778 -16.64344 -16.39886 -16.06424 -14.59146 -14.53387 -13.92867 -13.74805 -12.86061 -12.20495 -11.82735 -11.32600 -11.07499 -11.00322 -10.70402 -10.48305 -10.46627 -10.14401 -9.97821 -9.76453 -9.24531 -8.47293 -7.53023 -6.11965 -4.16498 1.10789 1.59756 2.20540 2.43091 2.71737 3.30878 3.34849 3.38482 3.83500 4.39491 4.92665 5.24561 5.24620 5.54705 5.90964 6.09952 6.38750 6.58628 7.19854 7.41924 7.47732 7.83434 7.88157 8.18588 8.87796 9.48183 10.98887 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.082257 B = 0.005506 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.312939 B = 5083.947060 C = 5401.250473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.037 3.963 10 C -0.072 4.072 11 S -0.031 6.031 12 C 0.227 3.773 13 N -0.306 5.306 14 N -0.305 5.305 15 C 0.389 3.611 16 O -0.440 6.440 17 N -0.603 5.603 18 H 0.424 0.576 19 H 0.264 0.736 20 H 0.030 0.970 21 H 0.029 0.971 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.489 -15.321 1.752 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.003 4.003 10 C -0.220 4.220 11 S 0.198 5.802 12 C -0.154 4.154 13 N -0.145 5.145 14 N -0.148 5.148 15 C 0.074 3.926 16 O -0.240 6.240 17 N -0.236 5.236 18 H 0.264 0.736 19 H 0.074 0.926 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.862 -14.643 1.150 14.806 hybrid contribution 0.117 -0.243 0.493 0.562 sum 1.979 -14.886 1.642 15.107 Atomic orbital electron populations 1.69944 1.06100 1.27188 1.49816 1.24994 0.94925 0.99380 0.94828 0.86527 0.79481 0.82415 0.78860 1.20021 1.21186 1.20034 1.20997 0.93246 0.89654 1.52113 0.92019 1.18991 0.93405 0.89133 0.98769 1.24146 1.02206 0.89720 1.05955 1.85791 1.04649 0.98309 1.91403 1.26772 1.00150 0.86313 1.02120 1.78542 0.99925 1.13225 1.22769 1.78100 1.21574 0.94448 1.20665 1.21774 0.82090 0.86314 1.02384 1.84956 1.91144 1.13382 1.34532 1.44429 1.10171 1.05944 1.63066 0.73621 0.92624 0.95217 0.95233 0.89444 0.89436 0.73429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 14 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 14 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 14 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 14 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 14 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 14 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 14 9 C 0.04 0.90 4.98 -27.88 -0.14 0.76 14 10 C -0.07 -1.45 5.52 37.16 0.21 -1.25 14 11 S -0.03 -0.51 22.16 -107.50 -2.38 -2.89 14 12 C 0.23 3.67 8.42 -88.42 -0.74 2.92 14 13 N -0.31 -5.76 12.30 30.66 0.38 -5.39 14 14 N -0.31 -5.30 12.71 29.68 0.38 -4.92 14 15 C 0.39 5.13 9.60 -88.73 -0.85 4.28 14 16 O -0.44 -4.03 13.65 -18.66 -0.25 -4.29 14 17 N -0.60 -7.43 6.14 -13.99 -0.09 -7.51 14 18 H 0.42 3.61 8.96 -40.82 -0.37 3.24 14 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 14 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 14 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 14 22 H 0.09 1.78 8.14 -51.92 -0.42 1.36 14 23 H 0.09 1.77 8.14 -51.92 -0.42 1.35 14 24 H 0.41 1.37 9.06 45.56 0.41 1.78 14 LS Contribution 240.83 15.07 3.63 3.63 Total: -1.00 -32.26 240.83 -5.75 -38.01 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -1.18 Total: -1.61 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.94 Total: -6.08 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 1.40 Total: -42.78 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.25 Total: -4.29 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.38 Total: -2.89 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.26 -5.75 -38.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308076948.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.670 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds